Possible molecular hydrogen formation mediated by the radical cations of anthracene and pyrene

Hydrogen molecules cannot be formed readily by the association of gaseous hydrogen atoms. Possible H(2) formation mediated by the radical cations of typical polycyclic aromatic hydrocarbons (PAHs), anthracene and pyrene, was studied at the B3LYP/6-31G** level of theory. We presumed that H(2) is formed by way of two elementary reactions: the addition of an H atom to a PAH molecular cation, and the H abstraction from the resulting monohydro-PAH cation (i.e., arenium ion) by a second H atom to yield H(2). The first reaction takes place without any activation energy. The second reaction is also predicted to proceed along almost barrierless pathways, although it is far from being a typical ion-molecule reaction. There is a possibility that these reactions might constitute one of the mechanisms for H(2) formation in extremely cold interstellar space. Deuterium enrichment in PAH cations is possibly accompanied by such H(2) formation because deuteration lowers the energies of polyatomic PAH cations appreciably.     

Synthesis of novel fluoroalkyl end‐capped oligomers/silica gel polymer hybrids possessing antibacterial activity

New fluoroalkyl end‐capped oligomers/silica gel polymer hybrids‐low‐molecular weight biocide (hibitane) composites were prepared by the reactions of tetraethoxysilane (TEOS) with fluoroalkyl end‐capped N‐(1,1‐dimethyl‐3‐oxobutyl)acrylamide oligomer, N,N‐dimethylacrylamide oligomers, and acrylic acid oligomers in methanol under acidic conditions at room temperature. The presence of hibitane in the composites was clarified by the use of elementary analyses of nitrogen in fluorinated acrylic acid oligomer composite and thermogravimetric analysis (TGA) of these fluorinated composites. Thermal stability of fluorinated composites thus obtained were found to increase significantly compared to those of the parent fluorinated oligomers. Thermal stability of fluorinated N,N‐dimethylacrylamide oligomer, acrylic acid oligomer/silica gel polymers hybrid‐hibitane composites decreased compared to those of the corresponding fluorinated oligomers/silica gel polymer hybrids; however, the thermal stability of fluorinated N‐(1,1‐dimethyl‐3‐oxobutylacryl)amide oligomer/silica gel polymer hybrid‐hibitane composite increased significantly compared to that of the corresponding fluorinated oligomer hybrid. The sol methanol solutions of these fluorinated composites were applied to the surface modification of glass to exhibit not only a strong oleophobicity imparted by end‐capped fluoroalkyl groups in oligomers but also a good hydrophilicity on the glass surface. Fluorinated oligomers/silica gel polymer hybrids‐hibitane composites were found to exhibit high anti‐bacterial activity against Pseudomonas aeruginosa and Staphylococcus aureus. Therefore, these fluorinated hibitane composites are suggested to have high potential for new attractive functional materials through not only their excellent surface active property imparted by fluorine and their thermal stability but also through their anti‐bacterial activity. Copyright © 2005 John Wiley & Sons, Ltd.     

Concerted interaction between conjugated double bond CHs and multiple OHs in polyene macrolide antibiotic chainin: weak =C-H...O interactions responsible for intrinsic molecular assembly

The concerted interactions observed between five conjugated double bond CHs and four hydroxy Os in the crystal of chainin, a polyene macrolide antibiotic, clarified the existence of unprecedented, weak =C-H...O interactions, which is important for forming its intrinsic molecular assembly.     

Synthesis of fluorescent label, DBD-beta-proline, and the resolution efficiency for chiral amines by reversed-phase chromatography

DBD-d(and l)-beta-proline, new fluorescent chiral derivatization reagents, were synthesized from the reaction of 4-(N,N-dimethylaminosulfonyl)-7- fl uoro-2,1,3-benzoxadiazole (DBD-F) with beta-proline. The racemic mixture synthesized was separated by a chiral stationary phase (CSP) column, Chiralpak AD-H, with n-hexane-EtOH-TFA-diethylamine (70:30:0.1:0.1) as the mobile phase. The dl-forms were decided according to the results obtained from a circular dichroism (CD) detector after separation by the CSP column. The fractionated enantiomers reacted with chiral amine to produce a couple of diastereomers. The labeling proceeded in the presence of 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) and pyridine as the activation reagents. The reaction conditions were mild and no racemization occurred during the diastereomer formation. The resulting diastereomers fluoresced at around 570 nm (excitation at around 460 nm). Good linearity of the calibration curves was obtained in the range 1-75 pmol and the detection limits on chromatogram were less than 1 pmol. The separability of the diastereomers was compared with the diastereomers derived from DBD-d(or l)-proline. The resolution values (Rs) obtained from the diastereomers of three chiral amines with DBD-d(or l)-beta-proline were higher than those derived from DBD-d(or l)-proline, e.g. dl-phenylalanine methylester (dl-PAME), 2.23 vs 1.37; (R)(S)-1-phenylethylamine [(R)(S)-PEA], 2.09 vs 1.13; and (R)(S)-1-(1-naphthyl)ethylamines [(R)(S)-NEA], 5.19 vs 1.23. The results suggest that the position of COOH group on pyrrolidine moiety in the structures is one of the important factors for the efficient separation of a couple of the diastereomers.     

Characterization of labelling and de-labelling reagents for detection and recovery of tyrosine residue in peptide

This paper characterized the labelling and de-labelling reagents for reversible labelling of tyrosine (Tyr)-containing peptide, which involves detection and recovery. The phenolic hydroxyl group (-OH) in Tyr structure reacted with 4-fluoro-7-nitro-2,1,3-benzoxadiazole (NBD-F), 4-(N,N-dimethylaminosulfonyl)-7-fluoro-2,1,3-benzoxadiazole (DBD-F), and 1-fluoro-2,4-dinitrobenzene (DNFB) under mild conditions at room temperature at pH 9.3. The labels in the resulting derivatives were removed with the treatment of nucleophiles, such as thiols (cysteine, N-acetyl-L-cysteine and dithiothreitol) and amines (dimethylamine, methylamine, diethylamine, ethylamine and pyrrolidine). The de-labelling reactions of NBD-labelled N-acetyl-L-tyrosine (N-AcTyr) with the nucleophiles produced N-AcTyr, accompanied by NBD-nucleophile. Although DBD-F and DNFB also successfully labeled the -OH group in N-AcTyr, the efficiency of Cbond;O bond cleavage and recovery of N-AcTyr by the nucleophiles was relatively low compared with NBD-label. Among the de-labelling reagents, N-acetyl-L-cysteine and dimethylamine were recommended for the elimination of NBD moiety, with respect to the reaction rate, the side reaction, and the yield of recovery. The proposed procedure, which includes the labelling with NBD-F and the removal of NBD moiety by the nucleophiles, was successfully applied to the reversible labelling of N-terminal amine-blocked peptides, i.e. N-AcTyr-Val-Gly, Z-Glu-Tyr, Z-Phe-Tyr, N-Formyl-Met-Leu-Tyr, and N-AcArg-Pro-Pro-Gly-Phe-Ser-Pro-Tyr-Arg.     

Effect of preparatory conditions on the performance of photopolymerized sol-gel monoliths for capillary electrochromatography

We prepared different photopolymerized sol-gel (PSG) columns by varying the amount of monomer (methacryloxypropyltrimethoxysilane), porogen (toluene) and catalyst (hydrochloric acid) in the reaction solution containing a photoinitiator (Irgacure 1800). The effects of these variations on the chromatographic behavior of the PSG columns were studied. All of the columns studied exhibited reversed-phase character. The concentration of hydrochloric acid was important for the rigidity of the columns, although it did not affect the separation property. The ratio of monomer solution to porogen was a critical factor in controlling the through-pore size and the surface area of PSG, which were found to significantly affect the separation properties, such as permeability, theoretical plate number, retention time, and separation efficiency, of a mixture of test analytes-thiourea, benzene, and naphthalene. There was no change in the retention order for the test analytes. Short separation times were achieved on PSG columns made from a 10% monomer stock solution and 90% porogen with 1 M hydrochloric acid. Mixtures of polycyclic aromatic hydrocarbons and alkylbenzenes were separated with theoretical plate numbers greater than 100 000 plates/m.     

Product analyses of ozone mediated nitration of benzimidazole derivatives with nitrogen dioxide: formation of 1-nitrobenzimidazoles and conversion to benzotriazoles

Several benzimidazole derivatives having electron-withdrawing or -donating substituent(s) at the benzene moiety were used as models of the imidazole moiety of purine bases and their nitration with nitrogen dioxide and ozone (so-called Kyodai nitration) were examined. Products were extracted from the reaction mixture with AcOEt and their structures were analyzed. 1-Nitrobenzimidazole derivatives and unexpected 1-nitrobenzotriazole derivatives were identified. Although the yields of 1-nitrobenzimidazole derivatives were quite low, these were all new compounds that could be obtained only by Kyodai nitration. It was speculated that benzotriazoles were formed via 1-nitrobenzimidazoles and subsequent nitration toward benzotriazoles resulted in the formation of 1-nitrobenzotriazoles.     

The Solid-State and Solution Conformations of (+)-Chelidonine

The solid-state and solution conformations of (+)-chelidonine ( 1 ), a biologically active alkaloid, were determined by X-ray diffraction and ¹H-NMR spectroscopy, X-Ray diffraction analysis revealed a conformer with B/C ‘anti-type’ cis conjunction, a half-chair of ring B , and a twist half-chair of ring C. One H₂O molecule per one alkaloid molecule was cocrystallized and stabilized by H-bonding with OH? C(11). Analysis of the thermal behavior of the crystal showed more thermal stability in the monohydrate than the anhydrate. The NMR measurement of concentration and temperature dependences in CDCl₃ and in (CD₃)₂SO suggested that the OH group of 1 was intramolecularly H -bonded to N(5) in (CD₃)₂SO and intermolecularly H-bonded to the solvent in CDCl₃. Conformational-energy calculations by the MNDO method showed that the intramolecular H -bond was little affected by the conformational stabilization of 1 .     

Chiral induction controlled by aggregation of organometallics: trifluoromethylated aminoalcohols for chiral ligands in Et2Zn alkylation of benzaldehyde

Chiral induction in the reaction of Et2Zn with PhCHO by fluorinated chiral amino alcohols was correlated to the extent of aggregation of Et2Zn species, which was estimated by manometric study.     

Ab initio molecular-orbital study of structures and energetics of Si3H3 neutral and anion

The geometric structures and isomeric stabilities of various stationary points in Si(3)H(3) neutral and its anion are investigated at the coupled-cluster singles, doubles (triples) [CCSD(T)] level of theory. For geometrical surveys, the basis sets used are of the Dunning's correlation consistent basis sets of triple-zeta quality for the neutral. To the anions, the Dunning's correlation consistent basis sets of double-zeta quality with diffuse functions are applied. For the three lower-lying anion isomers, the Dunning's correlation consistent basis sets of triple-zeta quality with diffuse functions (aug-cc-pVTZ) are also used. The final energies for the optimized stationary points are calculated at the CCSD(T) level of theory with the aug-cc-pVTZ basis sets. The basis sets of 6-311++G(3df,2pd) were also used for the lower-lying anion isomers. The Gaussian-2 method was performed only for the lower-lying anion isomers to clarify the relative stabilities. The global minimum neutral 1 (C(1):(2)A) has an unsymmetrical hydrogen-bridged bond; the conformer 2 in C(s) symmetry is a saddle point connecting the two equivalent isomers 1. Two lower-lying isomers (3 and 4) are also predicted within the energy range of 20 kJmol. In the anion, however, the conformer 4 (C(s):(1)A(')) with five formal valence electrons is a global minimum. Two more isomers (2 and 3) lie within 20 kJmol as in the neutral; the conformer 1 converts to the isomer 2. The quartets for the neutrals and diradical triplets for the anions were further studied; lower-lying quartets and triplets, competing with the corresponding doublet and singlet, respectively, were not found in the present systems. The vertical and adiabatic electron affinities of the global minimum neutral 1, producing the second lowest-lying anion isomer 2, amount to 2.18 and 2.35 eV, respectively, at the CCSD(T)/aug-cc-pVTZ level of theory. The electron addition to the third lowest-lying neutral isomer 4 produces the largest vertical electron affinities of 2.48 eV. The D(3h) structure, being the global minimum in the corresponding Si(3)H(3) (+) cation (trisilacyclopropenyl cation), converts to the isomer 8 (C(s)) or 11 (C(2)) due to the Jahn-Teller effect in the Si(3)H(3) neutral.