Ligand Design to Acquire Specificity to Intended G-Quadruplex Structures

A G-quadruplex is a nucleic acid secondary structure that is adopted by guanine-rich sequences, and is considered to be relevant in various pharmacological and biological contexts. G-Quadruplexes have also attracted great attention in the field of DNA nanotechnology because of their extremely high thermal stability and the availability of many defined structures. To date, a large repertory of DNA/RNA G-quadruplex-interactive ligands has been developed by numerous laboratories. Several relevant reviews have also been published that have helped researchers to grasp the full scope of G-quadruplex research from its outset to the present. This review focuses on the G-quadruplex ligands that allow targeting of specific G-quadruplexes. Moreover, unique ligands, successful methodologies, and future perspectives in relation to specific G-quadruplex recognition are also addressed.     

Combustion behaviors of isolated n-decane and ethanol droplets in carbon dioxide-rich ambience under microgravity

The burning and sooting behaviors of isolated fuel droplets for ethanol and n-decane are examined in high concentration of the ambient carbon dioxide under microgravity. A quartz fiber with the diameter of 50 μm maintains the droplet in the center of the combustion chamber and the range in the initial droplet diameter is from 0.30 to 0.80 mm. The ambience consists of oxygen, nitrogen and carbon dioxide. The concentration of oxygen is 21% in volume, and that of carbon dioxide is varied from 0% to 60% in volume. Detail measurements of the projected image of the droplet are conducted by using a high speed video camera and the effective droplet diameter squared are calculated from the surface area of the rotating body of the projected object. From evolutions of the droplet diameter squared, the instantaneous burning rates are calculated. Time history of the instantaneous burning rate clearly represents the droplet combustion events, such as the initial thermal expansion, ignition and following combustion. The instantaneous burning rate for n-decane shows an increasing trend during combustion, while that for non-sooting ethanol remains almost constant or shows a decreasing trend. A slight stepwise increase in the instantaneous burning rate is observed for larger n-decane droplets in air, which may be attributed to soot accumulation. However, this behavior of the burning rate disappears in higher concentration of carbon dioxide. Direct observation of the droplet flame indicates suppression of soot production in higher concentration of carbon dioxide and the suppression is enhanced for smaller droplet.     

REDUCTIVE DEIMINATION OF SULFOXIMIDES AND SULFIMIDES WITH P-TOLUENESULFONYL NITRITE AND T-BUTYL THIONITRATE1

Abstract

Reduction of sulfimides and sulfoximides with p-toluenesulfonyl nitrite, a new nitrosating agent, gave nearly quantitatively the corresponding deimination products, sulfides and sulfoxides, respectively. In the reaction of dialkyl and aryl alkyl sulfoximides with t-butyl thionitrate, N-t-butylthiosulfoximides were obtained besides the usual deimination products, although diaryl sulfoximides were readily deiminated to the corresponding sulfoxides in good yields in the same treatment. t-Butyl thionitrate was also found to deiminate diphenyl sulfimide to give diphenyl sulfide in good yield. Sulfoximides reacted sluggishly with t-butyl thionitrite, however, eventually affording a small amount of sulfoxides.     

A Novel Synthesis of 1-Isochromanols via Hetero Diels-Alder Reaction of Carbonyl Compounds with 1-Trimethylsilyloxy-benzocyclobutene as a Precursor of α-Oxy-o-Quinodimethane Under Mild Condition

Reaction of 1-trimethylsilyloxybenzocyclobutene(1) with carbonyl compounds catalyzed by tris(dimethylamino)sulfur (trimethylsilyl)difluoride (TASF) at room temperature gave 1-isochromanol derivatives as corresponding hetero Diels-Alder adducts in good yields.     

Synthesis and lyotropic liquid crystal properties of chiral helical polycarbodiimides

Chiral helical polymers have been expected to exhibit optical activity with a significantly large optical rotation power. In this paper polymethylphenylethylcarbodiimides (Poly-PhEMCDI) with helical structure were synthesized by the insertion polymerization of a corresponding chiral monomeric carbodiimide initiated by a copper complex. The circular dichroism spectra and optical rotation power induced by the ordered rigid main chain helical structure of polycarbodiimides, in solution and as cast films, were studied. Polycarbodiimides have a rigid rod helical structure and form lyotropic liquid crystal (LLC) in organic solvents such as dichloromethane (DCM), chloroform and THF. The LLC phase was studied using polarizing optical microscopy and X-ray diffraction. A chiral nematic phase was formed in DCM and chloroform in the concentration range 20–36%. Spherulites were formed in more concentrated solution. The formation of a LLC phase in polycarbodiimides organic solutions makes it possible to align the polymer helical chain to form an ordered film for electro-optical applications.     

Alignment control of liquid crystals on surface relief gratings

Liquid crystal alignment layers of a high T _g polymer containing an azobenzene moiety are prepared by photofabrication of a surface relief grating (SRG). The interference pattern of a circular and linearly polarized Ar⁺ laser beam generated the surface relief grating and the morphology was detected by atomic force microscope. The optical anisotropy of the films was investigated by polarizing optical microscopy. The orientation of the optical axis of the film mainly depends on the direction of the initial polarization plane. Nematic liquid crystals were aligned parallel to the direction of the grating, but the pretilt angles of the liquid crystals were nearly zero. Irradiation with homogeneous linearly polarized light could also align liquid crystals, but this alignment capability was weaker than that of the SRG film.     

NMR and DFT studies on persistent carbocations derived from benzo[kl]xanthene,dibenzo[d,d′]benzo[1,2‐b:4,3‐b′]difuran,and dibenzo[d,d′]benzo[1,2‐b:4,5‐b′]difuran in superacidic media

Persistent carbocations generated by the protonation of hetero‐polycyclic aromatic compounds with oxygen atom(s) were studied by experimental NMR and density function theory calculations. Benzo[kl]xanthene ( 1 ), dibenzo[d,d′]benzo[1,2‐b:4,3‐b′]difuran ( 2 ), and dibenzo[d,d′]benzo[1,2‐b:4,5‐b′]difuran ( 3 ) were synthesized by the annulation of arenediazonium salts. Compound 1 in FSO₃H‐SbF₅ (4:1)/SO₂ClF and 3 in FSO₃H‐SbF₅ (1:1)/SO₂ClF ionized to 1aH⁺ with protonation at C(4) and to 3aH⁺ with protonation at C(6), and these cations were successfully observed by NMR at low temperatures. The density function theory calculations indicated that 1aH⁺ and 3aH⁺ were the most stable protonated carbocations and that 2 should ionize to 2aH⁺ with protonation at C(6). According to the changes in ¹³C chemical shifts (Δδ¹³C), the positive charge was delocalized into the naphthalene unit for 1aH⁺ , into one benzo[b,d]furan unit for 2aH⁺ , and into one benzo[b,d]furan unit for 3aH⁺ . Copyright © 2015 John Wiley & Sons, Ltd.     

Temperature dependence of the lattice locations of boron implanted in germanium

The β-NMR of the probe atom ¹²B implanted in In-doped germanium was measured as a function of temperature. As a result, three resonances were observed: sharp and broad resonances around the Larmor frequency and a resonance split by the electric quadrupole interaction. It was found that the appearance of the resonances is similar to the case of Si host (Izumikawa et al. Hyperfine Interact. 136/137:559–605, 2001). The quadrupole coupling constant for the split resonance was deduced as ∣eqQ/h∣ = 252(3) kHz under the assumption that it has <111> axial symmetry. And furthermore, assuming that the defect atom jumps thermally between the identical defect sites, the activation energy of the jump was deduced as 0.4 ± 0.1 eV.     

Quinonediimine‐Induced Oxidative Coupling of Organomagnesium Reagents

N,N′‐Diphenyl‐p‐benzoquinonediimine, a redox‐active unit of polyaniline, efficiently induced the oxidative homocoupling of various aryl‐ and vinylmagnesium reagents in suppressing the side reactions, such as 1,2‐ or 1,4‐addition reaction.