Isostructural materials achieved by using structurally equivalent donors and acceptors in halogen-bonded cocrystals

We demonstrate the supramolecular and structural equivalence of two halogen-bond donors (I and Br) and three acceptors (O, NH and S) through the synthesis of seven isostructural halogen-bonded cocrystals, involving six different molecules: 1,4-dibromo- and 1,4-diiodotetrafluorobenzene (donors) and thiomorpholine, thioxane, morpholine, and piperazine (acceptors). The formation of isostructural cocrystals indicates how cocrystallization may be used to overcome shape and functional group dissimilarities that control molecular arrangement in the solid state. The differences in composition between the seven isostructural cocrystals directly affect the strength and nature of halogen bonds between their constituents, allowing the systematic variation of cocrystal physical properties, in particular the melting point, without affecting their crystal structure. Replacement of each O or S halogen-bond acceptor with an NH group provided an approximate 70 degrees C increase in melting point, whereas the replacement of I with Br as the halogen-bond donor lowered the melting point of the resulting solid by a similar amount.     

Isn't self-assembly a misnomer? Multi-disciplinary arguments in favor of co-assembly

Self-assembly is a ubiquitous physicochemical phenomenon. It is inherent to molecular recognition effects in the biological domain, and thus presents a basis for understanding the constitution and dynamic organization of living beings. However, it is argued in this paper that the very notion of self-assembly presents an incorrect and misleading one for the physical effects that it stands for. Self-assembly presents a misnomer as each self-assembly process not only depends on, but also includes a certain degree of ordering in the immediate surrounding of the 'self-assembling' entities. Claims are provided to support the idea that every self-assembly process is, in fact, a co-assembly event, as it implies mutual changes and structuring of both the 'self-assembled' system and its nearest surrounding. This point of view is related to the systemic observation that there could be no physical qualities independent on the context of their existence. In order to illustrate that the concept of co-assembly presents only an instance of a more profound and systemic philosophy of life, the examples of the interplay between internal and external factors of development are provided from the fields of quantum and classical physics, biology, evolutionary theory and psychology.     

Reversible intramolecular C-C bond formation/breaking and color switching mediated by a N,C-chelate in (2-ph-py)BMes2 and (5-BMes2-2-ph-py)BMes2

A diboron compound with both 3-coordinate boron and 4-coordinate boron centers, (5-BMes2-2-ph-py)BMes2 (1) and its monoboron analogue, (2-ph-py)BMes2 (2) have been synthesized. Both compounds are luminescent but have a high sensitivity toward light. UV and ambient light cause both compounds to isomerize to 1a and 2a, respectively, via the formation of a C-C bond between a mesityl and the phenyl group, accompanied by a drastic color change from yellow or colorless to dark olive green or dark blue. The structures of 1a and 2a were established by 2D NMR experiments and geometry optimization by DFT calculations. Both 1a and 2a can thermally reverse back to 1 and 2 via the breaking of a C-C bond, with the activation barrier being 107 and 110 kJ/mol, respectively. The N,C-chelate ligands in 1 and 2 were found to play a key role in promoting this unusual and reversible photo-thermal isomerization process on a tetrahedral boron center. Reactions with oxygen molecules convert 1a and 2a to 5-BMes2-2-[(2-Mes)-ph]-pyridine (1b) and 2-(2-Mes)-ph-pyridine (2b), respectively.     

A potential high-throughput method for the determination of lipase activity by potentiometric flow injection titrations

Potentiometric FIA titrations were performed to determine enzyme activities of lipase type B from Candida antarctica, CAL-B. Two substrates, triacetin and tributyrin were hydrolyzed in phosphate buffer solutions, and the concentration change of the base component of the buffer was titrated in a carrier solution containing hydrochloric acid and potassium chloride. The system was calibrated with butyric acid and acetic acid, respectively. FIA titration peaks were evaluated with respect to peak height and peak area. Butyric acid and acetic acid could be titrated in the buffer solution from 3 × 10⁻³ mol L⁻¹ to 0.1 mol L⁻¹. The detection limit of enzyme activity was determined to be 0.07 U mL⁻¹ (15 min reaction time) and the minimum activity was calculated to be 0.035 units corresponding to 35 nmol min⁻¹. The specific activities of lipase B for the hydrolysis of tributyrin and triacetin were determined as 16 ± 2 U mg⁻¹ and 2 ± 0.2 U mg⁻¹ (per mg commercial lipase preparation), respectively.     

Study of interactions of concentrated marine dissolved organic matter with copper and zinc by pseudopolarography

The interaction of dissolved organic matter (DOM) with copper and zinc in a concentrated seawater sample was characterised by pseudopolarography. Measurements performed at increased concentrations of copper(II) ions showed successive saturation of active DOM sites which indicate possible partition of copper between (i) free or labile complexes, (ii) reduced and released within the potential window of the method, and (iii) electroinactive copper complexes. Pseudopolarograms measured at pH 4 indicate a release of copper which was bound to the active sites of DOM that formed non-labile complexes. Variation of the peak position and half-peak width along the scanned deposition potentials and with the increasing concentration of copper bear the information about the complex electrochemical processes at the electrode surface and in the bulk of the solution. Pseudopolarograms of zinc showed a strong dependence of the peak current and the peak position along the scanned deposition potentials on pH values, indicating preferentially complexation of zinc with carboxylic-like active sites of DOM in the measured sample. Pseudopolarography is a valuable method in the trace metal complexation and speciation studies, serving as a fingerprint of the analysed sample.     

Use of Different Salt Solutions in Salting-Out TLC of Co(III) Complexes on Silica Gel

Saturated aqueous solutions of 28 different salts have been studied as a potential mobile phases for salting-out thin-layer chromatography, on silica gel, of a series of four mixed bis-aminocarboxylato cobalt(III) complexes. In addition, by linear regression analysis of chromatographic data obtained for fifteen mixed aminocarboxylato Co(III) complexes (four series) with solutions of ammonium chloride, three alkali metal chlorides, and four alkaline earth metal chlorides, four linear dependences previously established on different adsorbents with (NH₄)₂SO₄ solutions were confirmed. The qualities of the separations achieved with the salts were compared and Li⁺, Mg²⁺, and Ca²⁺ chlorides are proposed as the most suitable.     

Quantum Monte Carlo study of small pure and mixed spin-polarized tritium clusters

We have investigated the stability limits of small spin-polarized clusters consisting of up to ten spin-polarized tritium T downward arrow atoms and the mixtures of T downward arrow with spin-polarized deuterium D downward arrow and hydrogen H downward arrow atoms. All of our calculations have been performed using the variational and diffusion Monte Carlo methods. For clusters with D downward arrow atoms, the released node procedure is used in cases where the wave function has nodes. In addition to the energy, we have also calculated the structure of small clusters using unbiased estimators. Results obtained for pure T downward arrow clusters are in good accordance with previous calculations, confirming that the trimer is the smallest spin-polarized tritium cluster. Our results show that mixed T downward arrow-H downward arrow clusters having up to ten atoms are unstable and that it takes at least three tritium atoms to bind one, two, or three D downward arrow atoms. Among all the considered clusters, we have found no other Borromean states except the ground state of the T downward arrow trimer.     

Quantum dynamics of H2, D2, and HD in the small dodecahedral cage of clathrate hydrate: evaluating H2-water nanocage interaction potentials by comparison of theory with inelastic neutron scattering experiments

We have performed rigorous quantum five-dimensional (5D) calculations and analysis of the translation-rotation (T-R) energy levels of one H(2), D(2), and HD molecule inside the small dodecahedral (H(2)O)(20) cage of the structure II clathrate hydrate, which was treated as rigid. The H(2)- cage intermolecular potential energy surface (PES) used previously in the molecular dynamics simulations of the hydrogen hydrates [Alavi et al., J. Chem. Phys. 123, 024507 (2005)] was employed. This PES, denoted here as SPC/E, combines an effective, empirical water-water pair potential [Berendsen et al., J. Phys. Chem. 91, 6269 (1987)] and electrostatic interactions between the partial charges placed on H(2)O and H(2). The 5D T-R eigenstates of HD were calculated also on another 5D H(2)-cage PES denoted PA-D, used by us earlier to investigate the quantum T-R dynamics of H(2) and D(2) in the small cage [Xu et al., J. Phys. Chem. B 110, 24806 (2006)]. In the PA-D PES, the hydrogen-water pair potential is described by the ab initio 5D PES of the isolated H(2)-H(2)O dimer. The quality of the SPC/E and the PA-D H(2)-cage PESs was tested by direct comparison of the T-R excitation energies calculated on them to the results of two recent inelastic neutron scattering (INS) studies of H(2) and HD inside the small clathrate cage. The translational fundamental and overtone excitations, as well as the triplet splittings of the j=0-->j=1 rotational transitions, of H(2) and HD in the small cage calculated on the SPC/E PES agree very well with the INS results and represent a significant improvement over the results computed on the PA-D PES. Our calculations on the SPC/E PES also make predictions about several spectroscopic observables for the encapsulated H(2), D(2), and HD, which have not been measured yet.     

Polarization dependence of transition intensities in double resonance experiments: unresolved spin doublets

The polarization dependence of transition intensities in multiple resonance spectroscopic experiments can provide information useful for making rotational assignments. A formalism to describe the polarization dependence of transition intensities in multiple resonance experiments, particularly for cases when two rotational/fine structure quantum numbers are needed to specify the state of the system, is presented. The formalism is presented in a form usable both when the transitions between the underlying fine structure components are experimentally resolved, as well as when they are unresolved, to form composite lines. This sort of treatment is necessary for cases when the two quantum numbers that specify the fine structure differ significantly, such as is the case at low N, when the difference between J and N becomes comparable to the value of J. Ratios of transition intensities in different experimentally convenient polarization arrangements are evaluated for the case of composite N transitions formed by combining the spin components of a doublet system. The formalism is expressed in a form easily extendable to accommodate experimental cases of more than two excitation steps, or a combination of excitation steps and an external static electric field. This polarization diagnostic has been experimentally applied to assign spectral features in double resonance Rydberg spectra of CaF.     

Theoretical study of the oxidative polymerization of aniline with peroxydisulfate: Tetramer formation

Semi‐empirical quantum chemical study of the oxidative polymerization of aniline with ammonium peroxydisulfate, in aqueous solutions without added acid, has been based on the MNDO‐PM3 computations of thermodynamic, redox, and acid–base properties of reactive species and the intermediates, combined with the MM2 molecular mechanics force‐field method and conductor‐like screening model of solvation. The main reaction routes of aniline tetramerization are proposed. The regioselectivity of the formation of aniline tetramers by redox and electrophilic aromatic substitution reactions is analyzed. It was proved that the linear N? C4 coupled tetra‐aniline is formed as a dominant product by three different pathways: comproportionation redox reaction between N‐phenyl‐1,4‐benzoquinonediimine and 4‐aminodiphenylamine, the one‐electron oxidation of aniline with its half‐oxidized N? C4 coupled trimer, and the electrophilic aromatic substitution reaction of aniline with fully oxidized N? C4 coupled trianiline nitrenium cation. The electrophilic aromatic substitution reaction of the N? C4 coupled aniline trimer with aniline nitrenium cation, as well as the oxidation of aniline with half‐oxidized branched trimer, lead to the branched aniline tetramers. The competing character of different tetramerization routes is highlighted. The oxidative intramolecular cyclization of branched oligoanilines and polyaniline, leading to the generation of substituted phenazine units, has been predicted to accompany the classical routes of the polymerization of aniline. Various molecular (branched vs. linear) oligomeric structures produced at different level of acidity during the course of polymerization and their impact on the formation of supramolecular structures of conducting polyaniline (nanorods and nanotubes vs. granular morphology), are discussed. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008