Universal fluorescent labeling of amplification products using locked nucleic acids

Amplification/hybridization‐based genetic analyses using primers containing locked nucleic acids (LNAs) present many benefits. Here, we developed a novel design for universal fluorescent PCR using LNAs. Universal fluorescent PCR generates intermediate nonlabeled fragments and final fluorescent fragments in a two‐step amplification process that uses locus‐specific primers with universal tails and universal fluorescent primers. In this study, a few standard nucleotides were replaced with LNAs only in the fluorescent universal primers. The sequence of the fluorescent universal primer significantly affected the amplification efficiency. For primers with three LNAs, the fluorescent primers with stable M13(‐47) sequences provided the most efficient signal (approximately tenfold higher than the primers with M13(‐21) sequences at lower Tm values). Moreover, AT‐rich LNA substitutions in the fluorescent primers produced much lower amplification efficiencies than GC‐rich substitutions. GC‐rich LNAs produced greater differences in Tm values among primers, and resulted in the preferential production of fluorescently labeled amplicons. The specificity and sensitivity of LNA‐containing fluorescent primers were assessed by genotyping eight STRs in Japanese individuals, and full STR profiles could be generated using as little as 0.25 ng of genomic DNA. The method permitted clear discrimination of alleles and represents sensitive STR genotyping at a reduced cost.     

Visualizing Hepatic Copper Release in Long–Evans Cinnamon Rats Using Single-Photon Emission Computed Tomography

The potential utility of an imaging agent for the detection of hepatic copper was investigated in a Wilson’s disease animal model. Solid-phase peptide synthesis was used to construct an imaging agent which consisted of a copper-binding moiety, taken from the prion protein, and a gamma ray-emitting indium radiolabel. Long–Evans Cinnamon (LEC) rats were used for the Wilson’s disease animal model. Our evaluation methodology consisted of administering the indium-labeled agent to both LEC and genetically healthy Long–Evans (LE) cohorts via a tail vein injection and following the pharmacokinetics with single-photon emission computed tomography (SPECT) over the course of an hour. The animals were then sacrificed and their livers necropsied. An additional control agent, lacking the copper-binding moiety, was used to gauge whether any change in the hepatic uptake might be caused by other physiological differences between the two animal models. LEC rats injected with the indium-labeled agent had roughly double the amount of hepatic radioactivity as compared to the healthy control animals. The control agent, without the copper-binding moiety, displayed a hepatic signal similar to that of the control LE animals. Additional intraperitoneal spiking with CuSO₄ in C57BL/6 mice also found that the pharmacokinetics of the indium-labeled, prion-based imaging agent is profoundly altered by exposure to in vivo pools of extracellular copper. The described SPECT application with this compound represented a significant improvement over a previous MRI application using the same base peptide sequence.     

Heterometallic hexanuclear cluster with an S = 8 spin ground state: MnII[MnII(hfac)2]3[NiII(pao)3]2 (hfac- = hexafluoroacetylacetonate,pao- = pyridine-2-aldoximate)

The heterometallic Mn(II)(4)Ni(II)(2) title compound has been synthesized and characterized by X-ray crystallography. The compound consists of a Ni-Mn-Ni linear moiety, [[Ni-(mu-NO)(3)](2)-Mn], linked by oximate bridges and three Mn(II) hfac terminal units attached by oximate oxygens in a di-mu-oxo fashion, forming a novel heterometallic cluster: Mn[Mn(hfac)(2)](3)[Ni(pao)(3)](2) (1). Magnetic measurements reveal the antiferromagnetic nature of the oximate pathway between Mn(II) and Ni(II) metal ions, which imposes an unusual high-spin ground state (S = 8) for 1.     

Thermodynamic study of sodium-iron oxides: Part II. Ternary phase diagram of the Na-Fe-O system

Studies on ternary phase diagrams of the Na-Fe-O system have been carried out from the thermodynamic point of view. Thermodynamic data of main ternary Na-Fe oxides Na₄FeO₃(s), Na₃FeO₃(s), Na₅FeO₄(s) and Na₈Fe₂O₇(s) have been assessed. A user database has been created by reviewing literature data together with recent DSC and vapor pressure measurements by the present authors. New ternary phase diagrams of the Na-Fe-O system have been constructed from room temperature to 1000 K. Stable conditions of the ternary oxides at 800 K were presented in predominance diagram as functions of oxygen pressure and sodium pressure.     

The Pt-catalyzed carboselenation of alkynes by selenoesters

[reaction: see text] The Pt-catalyzed carboselenation of terminal alkynes with selenoesters provided vinylselenides regio- and stereoselectively in moderate yields.     

Synthesis of silicon-bridged benzocrown ethers as novel ion-sensing chromophores based on the σ–π system

Compounds having two benzocrown ether units bridged by an organosilicon bridge were prepared by the reactions of lithiated benzocrown derivatives with dichloromono- and disilanes in THF, and the ionochromic effects on their optical properties were studied. Of those, disilanylene-bridged benzocrown ethers exhibited clear ionochromism in the emission spectra and the intensity of the original emission band at about 320 nm decreased and a new broad band centered at 400 nm appeared, when selected alkali or alkali-earth metal ions were added into the acetonitrile solutions. In contrast to this, no significant changes were observed in the UV absorption spectra on addition of the metal ions.     

Palladium-Catalyzed Skeletal Rearrangement of Substituted 2-Silylaryl Triflates via 1,5-C−Pd/C−Si Bond Exchange

A palladium-catalyzed skeletal rearrangement of 2-(2-allylarylsilyl)aryl triflates has been developed to give highly fused tetrahydrophenanthrosilole derivatives via unprecedented 1,5-C−Pd/C−Si bond exchange. The reaction pathways can be switched toward 4-membered ring-forming C(sp²)−H alkylation by tuning the reaction conditions to give completely different products, fused dihydrodibenzosilepin derivatives, from the same starting materials. The inspection of the reaction conditions revealed the importance of carboxylates in promoting the C−Pd/C−Si bond exchange.     

Activity of artificial mutant variants of human growth hormone deficient in a disulfide bond between Cys53 and Cys165

In order to understand the role of Cys53 and Cys165 of human growth hormone (hGH) in receptor-binding and biological activity, artificial mutant variants of hGH were prepared in Escherichia coli by in vitro mutagenesis. Variants of hGH were constructed by replacement of Cys165 with Ala ([Ala165]hGH) or Ser ([Ser165]hGH), by replacement of Cys53 with Ala ([Ala53]hGH), by replacement of Cys53 and Cys165 with Ala ([Ala53, Ala165]hGH), or by replacement of Cys53 with Ala and Cys165 with Ser ([Ala53,Ser165]hGH). All of the variants constructed as well as reduced hGH exhibited less biological activity than that of intact hGH, and the decreases in biological activity were almost equal, as measured by a sensitive biological assay for growth hormone: adipose conversion assay using 3T3-F442A cells. These variants also showed less receptor-binding activity than that of intact hGH. These results suggest that it is possible neither the residue Cys53 nor Cys165 is directly involved in the receptor binding, and that the disulfide bridge between Cys53 and Cys165 in hGH may not always be crucial for the biological activity, though necessary to express full hGH activity.     

New cyclic tellurides. Synthesis, reaction and ligand properties of 2,2,6,6-tetramethyl-1-oxa-4-tellura-2,6-disilacyclohexane (C6H16OSi2Te). X-Ray structure determination of C6H16OSi2TeI2

A new tellurium-containing heterocyclic compound, 2,2,6,6-tetramethyl-1-oxa-4-tellura-2,6-disilacyclohexane (C₆H₁₆OSi₂Te) (1), has been prepared by treatment of 1,3-bis(chloromethyl)-1,1,3,3-tetramethyldisiloxane with sodium telluride. Mononuclear and dinuclear palladium complexes of this telluride have been prepared by the reaction of 1 with PdCl₂(PhCN)₂ and Na₂PdCl₄, respectively. The following new derivatives of 1 have also been produced: C₆H₁₆OSi₂TeI₂ (2), C₆H₁₆OSi₂TeBr₂, C₆H₁₆OSi₂TeCl₂, C₆H₁₆OSi₂Te(CH₃)I, and C₆H₁₆OSi₂Te(CH₂Ph)Br. IR, ¹H and ¹³C NMR and mass spectral data of these new compounds are reported and discussed. ¹H NMR studies revealed that in CDCl₃ solution both telluronium salts reductively eliminate alkyl halide. The crystal structure of compound 2 has been determined by X-ray diffraction. The compound crystallizes in the monoclinic space group, P2₁/c, with four molecules in a unit cell of dimension a 12.960(3), b 8.846(2), c 13.754(4) Å, β 92.44(2)°, R = 0.049, and R_w = 0.067 for 3599 unique reflections with |F₀| > 3σ(F₀). The compound forms a six-membered ring of a slightly displaced boat type. The geometry about the Te atom is pseudo-octahedral, with two carbon atoms (Te-C = 2.156(7) and 2.137(6) Å) and two iodine atoms of the neighbouring molecules (weak intermolecular bonds, Te · I = 3.769 and 3.806 Å) in the equatorial positions and two iodine atoms (Te-I = 2.909(1) and 2.913(1) Å) in the axial positions.