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971.
Periodic trends in indirect nuclear spin-spin coupling tensors: relativistic density functional calculations for interhalogen diatomics 总被引:2,自引:0,他引:2
Bryce DL Wasylishen RE Autschbach J Ziegler T 《Journal of the American Chemical Society》2002,124(17):4894-4900
There have been significant advances in the calculation and interpretation of indirect nuclear spin-spin coupling (J) tensors during the past few years; however, much work remains to be done, especially for molecules containing heavy atoms where relativistic effects may play an important role. Many J tensors cannot be explained based solely on a nonrelativistic Fermi-contact mechanism. In the present work, the relativistic zeroth-order regular approximation density-functional (ZORA-DFT) implementation for the calculation of J has been applied to the complete series of homonuclear and heteronuclear diatomic halogen molecules: F(2), Cl(2), Br(2), I(2), At(2), ClF, BrF, IF, ClBr, ClI, and BrI. For all of these compounds, the reduced isotropic coupling constant (K(iso)) is positive and the reduced anisotropic coupling constant (DeltaK) is negative. With the exception of molecular fluorine, the magnitudes of K(iso) and DeltaK are shown to increase linearly with the product of the atomic numbers of the coupled nuclei. ZORA-DFT calculations of J for F(2) and ClF are in excellent agreement with the results obtained from multiconfigurational self-consistent-field calculations. The relative importance of the various coupling mechanisms is approximately constant for all of the compounds, with the paramagnetic spin-orbit term being the dominant contributor to K(iso), at approximately 70-80%. Available experimental stimulated resonant Raman spectroscopy data are exploited to extract the complete J((127)I,(127)I) tensor for iodine in two rotational states. The dependence of K(iso) and DeltaK on bond length and rovibrational state is investigated by using calculated results in combination with available experimental data. In addition to providing new insights into periodic trends for J coupling tensors, this work further demonstrates the utility of the ZORA-DFT method and emphasizes the necessity of spin-orbit relativistic corrections for J calculations involving heavy nuclei. 相似文献
972.
The Amber biomolecular simulation programs 总被引:32,自引:0,他引:32
Case DA Cheatham TE Darden T Gohlke H Luo R Merz KM Onufriev A Simmerling C Wang B Woods RJ 《Journal of computational chemistry》2005,26(16):1668-1688
We describe the development, current features, and some directions for future development of the Amber package of computer programs. This package evolved from a program that was constructed in the late 1970s to do Assisted Model Building with Energy Refinement, and now contains a group of programs embodying a number of powerful tools of modern computational chemistry, focused on molecular dynamics and free energy calculations of proteins, nucleic acids, and carbohydrates. 相似文献
973.
The dinuclear heterometallic complex [(CN)3Pt(mu-CN)Cu(NH3)4] has been obtained in the solid state, and its structure has been determined by X-ray diffraction techniques at two temperatures (102 and 233 K). C4H12CuN8Pt crystallizes in the orthorhombic system, with a = 14.554(3) A, b = 7.1901(12) A, c = 10.369(2) A, and V = 1085.1(3) A3 at 102 K (a = 14.5091(10) A, b = 7.2739(4) A, c = 10.4570(7) A, and V = 1103.61(12) A3 at 233 K), in space group Pnma, with Z = 4. The Pt and Cu atoms are linked by a CN bridge that presents a very bent C identical to N-Cu angle (120.1(6) degrees at 102 K). The C identical to N and N-Cu distances at 102 K are 1.147(10) and 2.394(7) A, respectively. [(CN)3Pt(mu-CN)Cu(NH3)4] is embedded in an extensive electrostatic net formed by (N)H...N(C) interactions which, it is concluded, play an important role in the extreme deviation from linearity observed for the C identical to N-Cu angle. 相似文献
974.
Ara I Forniés J García-Monforte MA Menjón B Sanz-Carrillo RM Tomás M Tsipis AC Tsipis CA 《Chemistry (Weinheim an der Bergstrasse, Germany)》2003,9(17):4094-4105
The neutral, five-coordinate platinum nitrosyl compounds [Pt(C(6)F(5))(3)(L)(NO)] (2) [L=CNtBu (2 a), NC(5)H(4)Me-4 (2 b), PPhMe(2) (2 c), PPh(3) (2 d) and tht (2 e)] have been prepared by the reaction of [NBu(4)][Pt(C(6)F(5))(3)(L)] (1) with NOClO(4) in CH(2)Cl(2). The ionic compound [N(PPh(3))(2)][Pt(C(6)F(5))(4)(NO)] (4) has been prepared in a similar way starting from the homoleptic species [N(PPh(3))(2)](2)[Pt(C(6)F(5))(4)] (3). Compounds 2 and 4 are all diamagnetic with [PtNO](8) electronic configuration and show nu(NO) stretching frequencies at around 1800 cm(-1). The crystal and molecular structures of 2 c and 4 have been established by X-ray diffraction methods. The coordination environment for the Pt center in both compounds can be described as square pyramidal (SPY-5). Bent nitrosyl coordination is observed in both cases with Pt-N-O angles of 120.1(6) and 130.2(7) degrees for 2 c and 4, respectively. The bonding mechanism of the nitrosyl ligand coordinated to various model [Pt(II)R(4)](2-) (R=H, Me, Cl, CN, C(6)F(5) or C(6)Cl(5)) and [Pt(C(6)F(5))(3)(L)](-) (L=CNMe, PH(3)) systems has been studied by density functional calculations at the B3LYP level of theory, using the SDD basis set. The R(4)Pt-NO and (C(6)F(5))(3)(L)Pt-NO interactions generally involve two components: i) a direct Pt-NO bonding interaction and ii) multicenter-bonding interactions between the N atom of the NO ligand and the donor atoms of the R and L ligands. Moreover, with the more complex R groups, C(6)F(5) or C(6)Cl(5), a third component has been found to arise, which involves multicenter electrostatic interactions between the positively charged NO ligand and the negatively charged halo-substituents in the ortho-position of the C(6)X(5) groups (X=F, Cl). The contribution of each component to the Pt-NO bonding in R(4)Pt-NO and (C(6)F(5))(3)(L)Pt-NO compounds seems to be modulated by the electronic and steric effects of the R and L ligands. 相似文献
975.
976.
Visser T Nijhuis TA van der Eerden AM Jenken K Ji Y Bras W Nikitenko S Ikeda Y Lepage M Weckhuysen BM 《The journal of physical chemistry. B》2005,109(9):3822-3831
Well-defined Pt-nanoparticles with an average diameter of 1 nm supported on a series of zeolite Y samples containing different monovalent (H+, Na+, K+, Rb+, and Cs+) and divalent (Mg2+, Ca2+, Sr2+, and Ba2+) cations have been used as model systems to investigate the effect of promotor elements in the oxidation of CO in excess oxygen. Time-resolved infrared spectroscopy measurements allowed us to study the temperature-programmed desorption of CO from supported Pt nanoparticles to monitor the electronic changes in the local environment of adsorbed CO. It was found that the red shift of the linear Pt-coordinated CO vibration compared to that of gas-phase CO increases with an increasing cation radius-to-charge ratio. In addition, a systematic shift from linear (L) to bridge (B) bonded CO was observed for decreasing Lewis acidity, as expressed by the Kamlet-Taft parameter alpha. A decreasing alpha results in an increasing electron charge on the framework oxygen atoms and therefore an increasing electron charge on the supported Pt nanoparticles. This observation was confirmed with X-ray absorption spectroscopy, and the intensity of the experimental Pt atomic XAFS correlates with the Lewis acidity of the cation introduced. Furthermore, it was found that the CO coverage increases with increasing electron density on the Pt nanoparticles. This increasing electron density was found to result in an increased CO oxidation activity; i.e., the T(50%) for CO oxidation decreases with decreasing alpha. In other words, basic promotors facilitate the chemisorption of CO on the Pt particles. The most promoted CO oxidation catalyst is a Pt/K-Y sample, which has a T(50%) of 390 K and a L:B intensity ratio of 2.7. The obtained results provide guidelines to design improved CO oxidation catalysts. 相似文献
977.
Tom Baikie Zahara Ahmad Antoine Maignan T.J. White 《Journal of solid state chemistry》2007,180(5):1538-1546
Solid-state reaction between SrCO3, Cr2O3 and SrF2 has produced the apatite phase Sr10(CrO4)6F2 and Sr2CrO4 which adopts the K2NiF4-type structure. The reaction outcome was very sensitive to the heating rate with rapid rise times favouring the formation of Sr2CrO4, which has been synthesised at ambient pressure for the first time. Powder X-ray diffraction and electron diffraction confirmed that Sr2CrO4 adopts a body centred tetragonal cell (space group I4/mmm) with lattice parameters a=3.8357(1) Å and c=12.7169(1) Å, while a combination of neutron and X-ray diffraction verified Sr10(CrO4)6F2 is hexagonal (space group P63/m) with lattice parameters a=9.9570(1) Å and c=7.4292(1) Å. X-ray photoelectron spectroscopy and magnetic measurements were used to characterise the oxidation states of chromium contained within these phases. 相似文献
978.
Yang Wang George F. Bertsch David Tománek 《Zeitschrift für Physik D Atoms, Molecules and Clusters》1993,25(2):181-184
Motivated by a discrepancy of five orders of magnitude between three different hyperpolarizability measurements on the C60 fullerene, we calculated the optical response of this cluster using a tight-binding Hamiltonian and compared the results to those for a benzene molecule. Our Hamiltonian reproduces the linear polarizability and hyperpolarizability of benzene reasonably well. For C60, our calculations of the bare polarizability agree only with two of the optical response measurements and indicate that the corresponding linear and nonlinear response of C60 is much larger than that of C6H6. We find that screening effects decrease this difference strongly, and also reduce the calculated hyperpolarizability of C60 to a value which is two orders of magnitude below the favored measurements. 相似文献
979.
Kim B Young T Harder E Friesner RA Berne BJ 《The journal of physical chemistry. B》2005,109(34):16529-16538
To isolate the effects of the inclusion of polarizability in the force field model on the structure and dynamics of the solvating water in differing electrostatic environments of proteins, we present the results of molecular dynamics simulations of the bovine pancreatic trypsin inhibitor (BPTI) in water with force fields that explicitly include polarization for both the protein and the water. We use three model potentials for water and two model potentials for the protein. Two of the water models and one of the protein models are polarizable. A total of six systems were simulated representing all combinations of these polarizable and nonpolarizable protein and water force fields. We find that all six systems behave in a similar manner in regions of the protein that are weakly electrostatic (either hydrophobic or weakly hydrophilic). However, in the vicinity of regions of the protein with relatively strong electrostatic fields (near positively or negatively charged residues), we observe that the water structure and dynamics are dependent on both the model of the protein and the model of the water. We find that a large part of the dynamical dependence can be described by small changes in the local environments of each region that limit the local density of non-hydrogen-bonded waters, precisely the water molecules that facilitate the dynamical relaxation of the water-water hydrogen bonds. We introduce a simple method for rescaling for this effect. When this is done, we are able to effectively isolate the influence of polarizability on the dynamics. We find that the solvating water's relaxation is most affected when both the protein and the water models are polarizable. However, when only one model (or neither) is polarizable, the relaxation is similar regardless of the models used. 相似文献
980.
Crowhurst L Lancaster NL Pérez-Arlandis JM Welton T 《Journal of the American Chemical Society》2004,126(37):11549-11555
In this work we report the effect of ionic liquids on a class of charge-neutral nucleophiles. We have studied the reactions of (n)butylamine, di-(n)butylamine, and tri-(n)butylamine with methyl p-nitrobenzenesulfonate in [bmpy][N(Tf)(2)], [bmpy][OTf], and [bmim][OTf] (bmpy = 1-butyl-1-methylpyrrolidinium; bmim = 1-butyl-3-methylimidazolium) and compared their reactivities, k(2), to those for the same reactions in the molecular solvents dichloromethane and acetonitrile. It was shown that all of the amines are more nucleophilic in the ionic liquids than in the molecular solvents studied in this work. Comparison is also made with the effect of ionic liquids on the reactivity of chloride ions, which are deactivated in ionic liquids. The Eyring activation parameters revealed that changes in the activation entropies are largely responsible for the effects seen. This can be explained in part by the differing hydrogen-bonding properties, as shown by the Kamlet-Taft solvent parameters, of each of these solvents and the formation of hydrogen bonds between the solvents and the nucleophiles. 相似文献