Effects of mutation on the amyloidogenic propensity of apolipoprotein C-II(60-70) peptide

Using experimental and computational methods we identified the effects of mutation on the structure and dynamics of the amyloidogenic peptide apoC-II(60-70), in monomeric and oligomeric states. Methionine (Met60) substitutions to hydrophilic Gln, hydrophobic Val, and methionine sulfoxide residues were investigated and the results compared with observations of fibril formation by the wild-type, Met60Gln, Met60Val, and oxidised Met60 (oxi-Met) apoC-II(60-70) peptides. ThT fluorescence measurements showed fibril formation by all peptides, however with different kinetics. The wild-type and Met60Val peptides formed fibrils fastest, while oxi-Met and Met60Gln peptides exhibited significantly longer lag phases. Molecular dynamics simulations showed that the mutated monomers exhibited structural features consistent with fibril-forming propensity, such as β-hairpin conformation and a hydrophobic core. However, important differences to the wild-type were also noted, such as increased structural flexibility (oxi-Met and Met60Gln systems) and a broader distribution of the aromatic angle orientation, which could contribute to the different fibrillation kinetics observed in these peptides. Our results also showed that the critical nucleus size for fibril formation by apoC-II(60-70) may not be very large, since tetrameric oligomers in anti-parallel configuration were very stable within the 100 ns of simulations. The single-point mutations Met60Val and Met60Gln had no significant effect on the structural stability of the tetramer. The rate of fibril formation by apoC-II(60-70) peptides was generally much faster compared to longer apoC-II(56-76) peptides. Also, the effects of amino acid modifications on the kinetics of peptide fibril formation differ from the effects observed for apoC-II(56-76) and full-length apoC-II, suggesting that additional mechanisms are involved in fibril formation by mature apoC-II.     

Surface oxides of the oxygen-copper system: Precursors to the bulk oxide phase?

To gain an initial understanding of the copper-based catalysts in commercially important chemical reactions such as the oxygen-assisted water-gas shift reaction, we performed density-functional theory calculations, investigating the interaction of oxygen and copper, focusing on the relative stability of surface oxides and oxide surfaces of the O/Cu system. By employing the technique of “ab initio atomistic thermodynamics”, we show that surface oxides are only metastable at relevant pressures and temperatures of technical catalysis, with no stable chemisorption phase observed even at very low coverage. Although exhibiting only metastability, these surface oxides resemble the bulk oxide material both geometrically and electronically, and may serve as a precursor phase before onset of the bulk oxide phase. Having identified the bulk oxide as the most stable phase under realistic catalytic conditions, we show that a Cu₂O(1 1 1) surface with Cu vacancies has a lower free energy than the stoichiometric surface for the considered range of oxygen chemical potential and could be catalytically relevant.     

On the geometrical and electronic structure of an ultra-thin crystalline silica film grown on Mo(1 1 2)

The atomic structure of a well-ordered silica film grown on a Mo(1 1 2) single crystal substrate is discussed in detail using the experimental and theoretical results available to date. New photoelectron spectroscopy results using synchrotron radiation and ultraviolet spectroscopy data are presented. The analysis unambiguously shows that the ultra-thin silica film consists of a two-dimensional network of corner-sharing [SiO₄] tetrahedra chemisorbed on the unreconstructed Mo(1 1 2) surface. The review also highlights the important role of theoretical calculations in the determination of the atomic structure of the silica films and in interpretation of experimental data.     

New chelating sorbents based on pyrazolone containing amines immobilized on styrene-divinylbenzene copolymer-I Synthesis and analytical characterization

A series of new cheating sorbents has been prepared by modification of styrene-divinylbenzene copolymer with different pyrazolone-containing amines. The substances were characterized by elemental analysis and infared spectroscopy. The complexation ability of the sorbents towards alkali, alkaline-earth, transition and precious metals has been studied. The new sorbents may successfully be applied to the simultaneous preconcentration of alkaline-earth and transition elements in neutral medium and to the selective separation of precious metals in acidic medium.     

Generating porosity in metal oxides thin films through introduction of polymer micelles

The generation of porosity in Nb₂O₅ sol–gel films through introduction of polymer micelles of commercially available copolymer Pluronic PE6800 [poly(ethylene glycol)-block-poly(propylene glycol)-block-poly(ethylene glycol)] was studied using direct observation of film morphology by Transmission Electron Microscopy and indirect calculations of free volume fraction by optical means. Mesoporous Nb₂O₅ films were deposited by the sol–gel and spin-coating methods and templated with aqueous solutions of Pluronic PE6800 with concentrations below and above critical micelle concentration determined by the modified dye solubilization method. The influence of the duration of the postdeposition annealing on total pore volumes was investigated by reflectance measurements and consequent calculation of optical properties and free volume fraction by Bruggeman effective medium theory. The possible application of the films in optical sensing of vapors has been demonstrated through reflectance measurements prior to and after acetone vapors exposure.     

Thermogravimetric study of the surfactant–diethanolamine–titanium isopropoxide system behavior

Mesoporous anatase TiO₂ materials with specific surface areas between 70 and 110 m² g^?1 were prepared via sol–gel technique using surfactants oleic acid and Triton-X (TX), in the presence or absence of diethanolamine, in methanol. Surfactants like TX or oleic acid (OA), as well as a gelating and chelate agent like diethanolamine (DEA) are commonly used in TiO₂ formation from a titanium isopropoxide solution. Thermogravimetric methods were applied in order to evaluate the effect of the addition of such molecules in a precursor suspension before TiO₂ materials preparation. The in situ investigation of such systems showed that numerous interactions occur between large molecules such as TX and OA that attributed on both steric effects and hydrogen bond formation. Materials prepared through modified sol–gel technique seem to be stabilized through DEA addition in the precursor suspension.     

Systematic comparison of empirical forcefields for molecular dynamic simulation of insulin

The use of atomistic simulation methodologies based on empirical forcefields has enhanced our understanding of many physical processes governing protein structure and dynamics. However, the forcefields used in classical modeling studies are often designed for a particular class of proteins and rely on continuous improvement and validation by comparison of simulations with experimental data. We present a comprehensive comparison of five popular forcefields for simulating insulin. The effect of each forcefield on the conformational evolution and structural properties of the peptide is analyzed in detail and compared with available experimental results. In this study we observed that different forcefields favor different structural trends. However, the all-atom forcefield CHARMM27 and the united-atom forcefield GROMOS 43A1 delivered the best representation of the experimentally observed dynamic behavior of chain B of insulin.     

The Activity of Substrates in the Catalyzed Nucleation of Undercooled Melts and Aqueous Aerosols

The aim of the present contribution is to analyze and to correlate the experimental evidence on the catalyzed nucleation in the crystallization of undercooled melts. This is done by using a new, generalized theoretical approach accounting for both the thermodynamics of adhesion (i.e. the interface bonding) and for correcting structural factors. Beside the usually considered lattice discrepancy substrate/overgrowing crystal in the present contribution as an additional structural corrective is introduced the polarizability of the building units of both interface constituents. It is shown that such a combined approach gives for the first time a way to correlate quantitatively experiment and theory in the case both of heterogeneous meteorolgical important nucleation catalysis and in the crystallization of glassforming organic and inorganic polymer melts. This approach leads to the possibility of predicting further promising nucleation catalysts and especially appropriate substrates in the induced crystallization of ice from undercooled water. An additional advantage of the theoretical concept derived here is that it allows also the determination of nucleation activity, Φ, of amorphous substrates or of crystallization cores with distorted structure – i.e. in cases, where the lattice discrepancy approach is impossible from the very beginning. Two main sources of experimental data are used: crystallization of aqueous aerosols induced by various crystallization cores and the heterogeneous crystallization of undercooled glassforming melts. Thus a new solution of a classical problem is attempted which may be of use in both meteorology and in the technical applications of induced nucleation by using foreign substrates.     

Titrimetric analysis with adding the titrant by means of electrodialysis

A titration method is developed that titrant is added continuously to the analyte by electromigration through an ion exchange membrane. A constant rate of the titrant addition is achieved by keeping the electric current constant. Analyte amount then is proportional to the titration time. The method is applied to the most widely used titrations with a visual end point indication.     

Vanadium oxides on aluminum oxide supports. 1. Surface termination and reducibility of vanadia films on alpha-Al2O3(0001)

Using density functional theory and statistical thermodynamics, we obtained the phase diagram of thin VnOm films of varying thickness (approximately 2-6 A, 1-6 vanadium layers) supported on alpha-Al2O3(0001). Depending on the temperature, oxygen pressure, and vanadium concentration, films with different thickness and termination may form. In ultrahigh vacuum (UHV), at room temperature and for low vanadium concentrations, an ultrathin (1 x 1) O=V-terminated film is most stable. As more vanadium is supplied, the thickest possible films form. Their structures and terminations correspond to previous findings for the (0001) surface of bulk V2O3 [Kresse et al., Surf. Sci. 2004, 555, 118]. The presence of surface vanadyl (O=V) groups is a prevalent feature. They are stable up to at least 800 K in UHV. Vanadyl oxygen atoms induce a V(2p) core-level shift of about 2 eV on the surface V atoms. The reducibility of the supported films is characterized by the energy of oxygen defect formation. For the stable structures, the results vary between 4.11 and 3.59 eV per 1/2O2. In contrast, oxygen removal from the V2O5(001) surface is much easier (1.93 eV). This provides a possible explanation for the lower catalytic activity of vanadium oxides supported on alumina compared to that of crystalline vanadia particles.