Polymeric networks of copper(II) using succinate and aromatic N-N donor ligands: synthesis, crystal structure, magnetic behaviour and the effect of weak interactions on their crystal packing

Four succinato-bridged complexes of copper(II) have been synthesized. Complex 1, [Cu(2)(mu-OH(2))(2)L(bpy)(2)(NO(3))(2)](n) and 2, [Cu(2)(mu-OH(2))(2)L(phen)(2)(NO(3))(2)](n)(bpy = 2,2[prime or minute]-bipyridine; phen = 1,10-phenanthroline and LH(2)= succinic acid) exhibit 1D coordination polymer structures where both the nitrate ions are directly linked to the copper(ii) producing synthons in a 2D sheet. A novel 2D grid-like network, ([Cu(4)L(2)(bpy)(4)(H(2)O)(2)](ClO(4))(4)(H(2)O))n3, is obtained upon changing the nitrate by perchlorate anion in complex 1, where the channels are occupied by the anions. On changing the nitrate by tetrafluoroborate anion in complex 2, a novel octanuclear complex, [Cu(8)L(4)(phen)(12)](BF(4))(8).8H(2)O 4, is isolated. The coligand bpy and phen in these complexes show face-to-face (in 1,2,3,4) or edge-to-face (in 4 )pi-pi interactions forming the multidimensional supramolecular architectures. Interestingly, the appearance of edge-to-face pi-pi interactions in complex facilitates the formation of discrete octanuclear entities. Variable-temperature (300-2 K) magnetic measurements of complexes have been done. Complexes 1 and 2 show very weak antiferromagnetic (OOC-CH(2)-CH(2)-COO) and ferromagnetic coupling (mu-H(2)O). Complex 3 also shows antiferromagnetic (syn-syn mu-OCO), and ferromagnetic coupling (mu-O of the -COO group). Complex 4 with two types (syn-syn and syn-anti) of binding modes of the carboxylate group shows strong antiferromagnetic interaction.     

Experimental and Theoretical Evidence of a Pb⋅⋅⋅Pb Ditetrel Bond Without a σ-Hole

The crystal structure of a newly synthesized compound, [PbL(Ac)]₂, (where L=2 (amino(pyrazin-2-yl) methylene) hydrazinecarbothioamide, Ac=acetate anion) exhibits a close contact between pairs of Pb atoms, suggesting a ditetrel bond, in addition to two Pb⋅⋅⋅O tetrel bonds, and two C−H⋅⋅⋅O H-bonds. The presence of this ditetrel bond as an attractive component is confirmed by various quantum chemical methods. This novelty of this particular bond is its existence even in the absence of a σ-hole on the Pb atom, which is typically considered a prerequisite for a bond of this type. From a wider perspective, a survey of the Cambridge Structural Database suggests this bond may be more common than was hitherto thought, with 44 examples of Pb⋅⋅⋅Pb contacts amongst a total number of 219 examples of T⋅⋅⋅T interactions in general (T=Si, Ge, Sn, Pb).     

Hetero-metallic frameworks of [Pd(CN)4] and Cu(II) with triamines: A rare example of a tetracyanometallate bridged 2D coordination polymer

Four cyano bridged Cu(II)–Pd(II) heterometallic complexes, [Cu(dpt)Pd(CN)₄]_n (1), {[Cu₂(medpt)₂Pd(CN)₄](ClO₄)₂ · 3H₂O}_n (2), {[Cu₂(dien)₂Pd(CN)₄](ClO₄)₂ · 2CH₃OH}_n (3) and {[Cu₂(iPrdien)₂Pd(CN)₄](ClO₄)₂ · 2H₂O}_n (4) [dpt = 3,3′-iminobispropylamine; medpt = 3,3′-diamino-N-methyldipropylamine; dien = diethylenetriamine and iprdien = N′-isopropyldiethylenetriamine] have been synthesized and characterized by single crystal X-ray diffraction analysis, magnetic measurement and thermal study. Complexes 1, 2 and 3 are 1D coordination polymers, while 4 presents a 2D network. In 1, the cis-directed cyanide ligands of [Pd(CN)₄]²⁻ anions link two Cu(dpt) units to form a neutral coordination polymer, whereas in 2, 3 and 4, all the cyanide groups of [Pd(CN)₄]²⁻ take part in bonding with four adjacent Cu(II) ions, resulting in cationic coordination polymers counterbalanced by perchlorate anions. The structures are compared with those of analogous [Ni(CN)₄]²⁻ derivatives. The magnetic behavior shows antiferromagnetic interactions in all the complexes.     

Solvation effects on the stability of silver(I) complexes with pyridine-containing ligands studied by thermodynamic and DFT methods

The formation of Ag(I) complexes with 2,2'-bipyridine (bipy), 2,2'6',2' '-terpyridine (terpy), 2-(aminomethyl)pyridine (amp), and bis((2-pyridyl)methyl)amine (dpa) is studied in dimethyl sulfoxide (dmso) by means of potentiometric and calorimetric measurements. Enthalpy-stabilized mononuclear MLj complexes are formed, whereas entropy changes counteract complex formation. Additionally, a comparison with analog Ag-polyamine species is made to evidence the significant different coordination behavior of these classes of ligands. The results are discussed in terms of different basicity and steric requirements of the ligands and solvation effects. The dpa ligand, with an unprecedented coordination pattern, forms also a bimetallic complex [Ag2(dpa)2]2+ that has been structurally characterized in the solid state by X-ray diffraction. The influence of solvent, water and dmso, on the binding energy of the monodentate pyridine to Ag(I) has also been assessed by means of density functional theory (DFT) calculations. This study has been extended also in vacuum to the reaction of Ag(I) with the simple monoamine methylamine (mea). These results are correlated with the experimental evidence and used to interpret the different affinities of pyridine for the Ag(I) ion in the two media.     

Half-sandwich RuII-[9]aneS3 complexes with dicarboxylate ligands: synthesis, characterization and chemical behavior

With the aim of further developing the structure-activity relationship in biologically active half-sandwich Ru(ii)-[9]aneS(3) complexes ([9]aneS(3)=1,4,7-trithiacyclononane), a series of new mono- and dinuclear complexes bearing the chelating dicarboxylate ligands oxalate (ox), malonate (mal) and methylmalonate (mmal), have been synthesized and studied. Treatment of the precursor [Ru([9]aneS(3))(dmso)(3)][CF(3)SO(3)](2) (7) with equivalent amounts of K(2)(dicarb) afforded the corresponding neutral complexes with the general formula [Ru([9]aneS(3))(dmso-S)(eta(2)-dicarb)] (where dicarb=ox (1), mal (2) and mmal (3)), while using half an equivalent of K(2)(ox), the symmetric dimer [{Ru([9]aneS(3))(dmso-S)}(2)(mu-eta(4)-ox)][CF(3)SO(3)](2) (4) was isolated. The reaction of with the oxalato complex fac-[Ru(dmso-S)(3)(dmso-O)(eta(2)-ox)] (9) yielded two asymmetric dimers, namely [{Ru([9]aneS(3))(dmso-S)}(mu-eta(4)-ox){fac-Ru(dmso-S)(3)(CF(3)SO(3))}][CF(3)SO(3)] (5) and [{Ru([9]aneS(3))(dmso-S)}(mu-eta(4)-ox){fac-Ru(dmso-S)(3)(dmso-O)}][CF(3)SO(3)](2) (6), depending on the reaction conditions. All new complexes were structurally characterized, both in solution (by NMR spectroscopy) and in the solid state (by X-ray crystallography). The chemical behavior of the complexes in aqueous solution was studied by UV-Vis and NMR spectroscopy in view of their potential antitumor activity: the monomers partially release a dmso ligand to yield the monofunctional aqua adduct [Ru([9]aneS(3))(eta(2)-dicarb)(H(2)O)], while the dimers rapidly open up the oxalato bridge to give two mononuclear fragments. Splitting of the asymmetric dimers 5 and 6 occurs selectively and the ox moiety remains bonded to the fac-Ru(dmso-S)(3) fragment. A detailed comparison of the structural and chemical features of 1-6 with those of similar dicarboxylate complexes possessing the fac-Ru(dmso-S)(3) fragment in place of Ru([9]aneS(3)) allows us to draw a number of general conclusions on the binding preferences of dicarb ligands on the octahedral Ru(II) center.     

Role of the phosphine ligands on the stabilization of monoadducts of the model nucleobases 1-methylcytosine and 9-methylguanine in platinum(II) complexes

The addition of 1-methylcytosine (1-MeCy) or 9-methylguanine (9-MeGu) to solutions of cis-(PPh3)2P(ONO2)2 (1a), in a molar ratio of 1:1, affords the monoadducts cis-[(PPh3)2Pt(1-MeCy)(ONO2)]NO3 (2a) and cis-[(PPh3)2Pt(9-MeGu)(ONO2)]NO3 (3a) and only trace amounts of the bisadducts cis-[(PPh3)2Pt(1-MeCy)2](NO3)2 (4a) and cis-[(PPh3)2Pt(9-MeGu)2](NO3)2 (5a), respectively. The X-ray structural determination of 2a and 3a indicates a strong pi-pi stacking interaction between one of the PPh3 phenyl groups and the pyrimydinic N3-platinated cytosine or the imidazole part of the N7-coordinated guanine base. The addition of a further equiv of nucleobase to the monoadducts forms quantitatively the bisadducts that have been isolated as pure compounds 4a and 5a. Under the same experimental conditions, the dinitrato analogue cis-[(PMePh2)2Pt(ONO2)2] (1b) forms the monoadducts 2b and 3b in equilibrium with a relatively high concentration (20-30%) of the bisadducts cis-[(PMePh2)2Pt(1-MeCy)2](NO3)2 (4b) and cis-[(PMePh2)2Pt(9-MeGu)2](NO3)2 (5b), which have been structurally characterized by single-crystal X-ray analysis. The characterization of the isolated complexes by multinuclear NMR spectroscopy is also described.     

Manganese(IV) complex with a polydentate Schiff base ligand: synthesis,crystal structure,TDDFT calculation,electronic absorption and EPR spectral study

A six-coordinate Mn(IV) complex, [Mn(H₂L)₂] (1) [H₄L = 2-methoxy-6-(tris(hydroxymethyl)methyliminomethyl)phenol], was synthesized and characterized by elemental analysis, single-crystal X-ray crystallography, FTIR, UV–Vis electronic absorption, and EPR spectroscopy. The single-crystal structural determination reveals that the complex crystallizes in tetragonal space group P4₁2₁2 and the tridentate Schiff base ligands are arranged in mer configuration chelating manganese, which exhibits as slightly distorted octahedral coordination sphere with a N₂O₄ chromophore. Weak hydrogen bonding interactions of uncoordinated hydroxyl groups result in a 2-D supramolecular structure. The UV–Vis electronic absorption and IR spectral data of 1 have been compared with the results obtained by employing DFT and time-dependent density functional theory calculation using B3LYP, B3PW91, and MPW1PW91 functionals, with 6-31G (d-p) and LanL2MB basis sets. The results of these calculations are functional-dependent and, among those used, B3PW91 proved to better reproduce the experimental results.     

Synthesis and crystal structure characterization of iron(II), cobalt(II) and nickel(II) complexes with 1,3-bis(2-pyridylmethylthio)propane

Three new mononuclear complexes of nitrogen–sulfur donor sets, formulated as [Fe^II(L)Cl₂] (1), [Co^II(L)Cl₂] (2) and [Ni^II(L)Cl₂] (3) where L = 1,3-bis(2-pyridylmethylthio)propane, were synthesized and isolated in their pure form. All the complexes were characterized by physicochemical and spectroscopic methods. The solid state structures of complexes 1 and 3 have been established by single crystal X-ray crystallography. The structural analysis evidences isomorphous crystals with the metal ion in a distorted octahedral geometry that comprises NSSN ligand donors with trans located pyridine rings and chlorides in cis positions. In dimethylformamide solution, the complexes were found to exhibit Fe^II/Fe^III, Co^II/Co^III and Ni^II/Ni^III quasi-reversible redox couples in cyclic voltammograms with E_1/2 values (versus Ag/AgCl at 298 K) of +0.295, +0.795 and +0.745 V for 1, 2 and 3, respectively.     

Delicate Balance of Non-Covalent Forces Govern the Biocompatibility of Graphitic Carbon Nitride towards Genetic Materials

Despite a plethora of suggested technological and biomedical applications, the nanotoxicity of two-dimensional (2D) graphitic carbon nitride (g-C₃N₄) towards biomolecules remains elusive. To address this issue, we employ all-atom classical molecular dynamics simulations and investigate the interactions between nucleic acids and g-C₃N₄. It is revealed that, toxicity is modulated through a subtle balance between electrostatic and van der Waals interactions. When the exposed nucleobases interact through predominantly short-ranged van der Waals and π–π stacking interactions, they get deviated from their native disposition and adsorb on the surface, leading to loss of self-stacking and intra-quartet H-bonding along with partial disruption of the native structure. In contrast, for the interaction with double-stranded structures of both DNA and RNA, long-range electrostatics govern the adsorption phenomena since the constituent nucleobases are relatively concealed and wrapped, thereby resulting in almost complete preservation of the nucleic acid structures. Construction of free energy landscapes for lateral translation of adsorbed nucleic acids suggests decent targeting specificity owing to their restricted movement on g-C₃N₄. The release times of nucleic acids adsorbed through predominant electrostatics are significantly less than those adsorbed through stacking with the surface. It is therefore proposed that g-C₃N₄ would induce toxicity towards any biomolecule having bare residues available for strong van der Waals and π–π stacking interactions relative to those predominantly interacting through electrostatics.