Determination of average degree of polymerisation and distribution of oligosaccharides in a partially acid-hydrolysed homopolysaccharide: a comparison of four experimental methods applied to mannuronan

The average degree of polymerisation (DP) and distribution of oligosaccharides in partially acid hydrolysed mannuronans were quantitatively evaluated by 1H NMR, electrospray ionisation mass spectrometry (ESI-MS), micellar electrokinetic capillary chromatography with UV detection (MEKC-UV), and high-pressure anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD). Our investigation shows that 1H NMR, MEKC-UV and, in particular, HPAEC-PAD can be used as quantitative tools to aid the investigation of polysaccharide structure, function and synthesis. For the latter two techniques, especially, this represents a significant new development as it enables calculation of the quantity of individual oligomers of nominal DP by direct analysis of a defined oligomer mixture. Appropriate statistical averages of number and weight distributions were also calculated and found to fit very well to predicted Kuhn distributions that assume random depolymerisation.     

Hierarchical dynamics in allostery following ATP hydrolysis monitored by single molecule FRET measurements and MD simulations

We report on a study that combines advanced fluorescence methods with molecular dynamics (MD) simulations to cover timescales from nanoseconds to milliseconds for a large protein. This allows us to delineate how ATP hydrolysis in a protein causes allosteric changes at a distant protein binding site, using the chaperone Hsp90 as test system. The allosteric process occurs via hierarchical dynamics involving timescales from nano- to milliseconds and length scales from Ångstroms to several nanometers. We find that hydrolysis of one ATP is coupled to a conformational change of Arg380, which in turn passes structural information via the large M-domain α-helix to the whole protein. The resulting structural asymmetry in Hsp90 leads to the collapse of a central folding substrate binding site, causing the formation of a novel collapsed state (closed state B) that we characterise structurally. We presume that similar hierarchical mechanisms are fundamental for information transfer induced by ATP hydrolysis through many other proteins.

We report on a study that combines advanced fluorescence methods with molecular dynamics simulations to cover timescales from nanoseconds to milliseconds for a large protein, the chaperone Hsp90.     

Aquaporin-11: A channel protein lacking apparent transport function expressed in brain

Background  

The aquaporins are a family of integral membrane proteins composed of two subfamilies: the orthodox aquaporins, which transport only water, and the aquaglyceroporins, which transport glycerol, urea, or other small solutes. Two recently described aquaporins, numbers 11 and 12, appear to be more distantly related to the other mammalian aquaporins and aquaglyceroporins.     

Synthetic protocols and building blocks for molecular electronics

Simple and readily accessible aryl bromides are useful building blocks for thiol end-capped molecular wires. Thus, 4-bromophenyl tert-butyl sulfide and 1-bromo-4-(methoxymethyl)benzene serve as precursors for a variety of oligo(phenylenevinylene) and oligo(phenyleneethynylene) wires via efficient synthetic transformations as presented in this paper.     

Isolated subgroups of finite abelian groups

Czechoslovak Mathematical Journal - We say that a subgroup H is isolated in a group G if for every x ∈ G we have either x ∈ H or 〈x〉 ∩ H = 1. We describe the set of...     

Artin algebras with only preprojective or preinjective modules are of finite type

This work was done while the second author visited Toru. This research was partially supported by the Polish Scientific Grant KBN No. 1222/2/91     

Criteria for local equilibrium in a system with transport of heat and mass

Nonequilibrium molecular dynamics is used to compute the coupled heat and mass transport in a binary isotope mixture of particles interacting with a Lennard-Jones/spline potential. Two different stationary states are studied, one with a fixed internal energy flux and zero mass flux, and the other with a fixed diffusive mass flux and zero temperature gradient. Computations are made for one overall temperature,T=2, and three overall number densities,n=0.1, 0.2, and 0.4. (All numerical values are given in reduced, Lennard-Jones units unless otherwise stated.) Temperature gradients are up to T=0.09 and weight-fraction gradients up to w ₁=0.007. The flux-force relationships are found to be linear over the entire range. All four transport coefficients (theL-matrix) are determined and the Onsager reciprocal relationship for the off-diagonal coefficients is verified. Four different criteria are used to analyze the concept of local equilibrium in the nonequilibrium system. The local temperature fluctuation is found to be T0.03T and of the same order as the maximum temperature difference across the control volume, except near the cold boundary. A comparison of the local potential energy, enthalpy, and pressure with the corresponding equilibrium values at the same temperature, density, and composition also verifies that local equilibrium is established, except near the boundaries of the system. The velocity contribution to the BoltzmannH-function agrees with its Maxwellian (equilibrium) value within 1%, except near the boundaries, where the deviation is up to 4%. Our results do not support the Eyring-type transport theory involving jumps across energy barriers; we find that its estimates for the heat and mass fluxes are wrong by at least one order of magnitude.     

Two-proton correlations in the target fragmentation region of nuclear collisions at 200A GeV

Correlations between protons are studied in the target fragmentation region of reactions of protons and¹⁶O with C, Cu, Ag, Au and of³²S with Al and Au at 200A GeV. The emitted protons were measured with the Plastic Ball detector in the WA80 experiment at the CERN SPS. The comparison of the correlation function with calculations, assuming a spherical, gaussian shaped source with a lifetime τ=0 fm/c, allows the extraction of radius parameters. The values are very close to those expected from the geometry of the target nuclei and increase with the target mass as αA _Target ^1/3 . Even in proton induced reactions the whole target nucleus is involved. The dependence of the radii on centrality, polar angleθ _lab, and energy, and their relation to measured proton yields are presented.     

Development of a very low energy μ+ beam at PSI

At PSI we are investigating the technique of decelerating an existing very intense secondary beam of surface ⁺ (4 MeV) to an energy of 10 eV using appropriate moderators. These ⁺ can then be used as a source of a tertiary beam of low energy muons with tunable kinetic energy between 10 eV and 10 keV.With a 1000 A layer of solid Argon deposited on an Al substrate we obtain a moderation efficiency (with respect to the number of incoming surface ⁺) of the order of 10^–4.Results of our investigations and the present status of the project are presented together with future plans and possibilities.     

Transient flow towards a well in an aquifer including the effect of fluid inertia

Transient propagation of weak pressure perturbations in a homogeneous, isotropic, fluid saturated aquifer has been studied. A damped wave equation for the pressure in the aquifer is derived using the macroscopic, volume averaged, mass conservation and momentum equations. The equation is applied to the case of a well in a closed aquifer and analytical solutions are obtained to two different flow cases. It is shown that the radius of influence propagates with a finite velocity. The results show that the effect of fluid inertia could be of importance where transient flow in porous media is studied.List of symbols b Thickness of the aquifer, m - c ₀ Wave velocity, m/s - k Permeability of the porous medium, m² - n Porosity of the porous medium - p( ,t) Pressure, N/m² - Q Volume flux, m³/s - r Radial coordinate, m - r _w Radius of the well, m - s Transform variable - S Storativity of the aquifer - S _d(r, t) Drawdown, m - t Time, s - T Transmissivity of the aquifer, m²/s - ( ,t) Velocity of the fluid, m/s - Coordinate vector, m - z Vertical coordinate, m - Coefficient of compressibility, m²/N - Coefficient of fluid compressibility, m²/N - Relaxation time, s - (r, t) Hydraulic potential, m - Dynamic viscosity of the fluid, Ns/m² - Dimensionless radius - Density of the fluid, Ns²/m⁴ - (, ) Dimensionless drawdown - Dimensionless time - , x Dummy variables - ₀, ₁ Auxilary functions