Quantum chemical evaluation of protein control over heme ligation: CO/O2 discrimination in myoglobin

Control of O2 versus CO binding in myoglobin (Mb) is tuned by a distal histidine residue through steric and H-bonding interactions. These interactions have been evaluated via Car-Parrinello DFT calculations, whose efficiency allows full quantum mechanical treatment of the 13 closest residues surrounding the heme. The small (8 degrees ) deviation of the Fe-C-O bond angle from linearity results from the steric influence of a distal valine residue and not the distal histidine. H-bond energies were evaluated by replacing the distal histidine with the non-H-bonding residue isoleucine. Binding energies for CO and O2 decreased by 0.8 and 4.1 kcal/mol for MbCO and MbO2, in good agreement with experimental H-bond estimates. Ligand discrimination is dominated by distal histidine H-bonding, which is also found to stabilize a metastable side-on isomer of MbO2 that may play a key role in MbO2 photodynamics.     

Army ants algorithm for rare event sampling of delocalized nonadiabatic transitions by trajectory surface hopping and the estimation of sampling errors by the bootstrap method

The most widely used algorithm for Monte Carlo sampling of electronic transitions in trajectory surface hopping (TSH) calculations is the so-called anteater algorithm, which is inefficient for sampling low-probability nonadiabatic events. We present a new sampling scheme (called the army ants algorithm) for carrying out TSH calculations that is applicable to systems with any strength of coupling. The army ants algorithm is a form of rare event sampling whose efficiency is controlled by an input parameter. By choosing a suitable value of the input parameter the army ants algorithm can be reduced to the anteater algorithm (which is efficient for strongly coupled cases), and by optimizing the parameter the army ants algorithm may be efficiently applied to systems with low-probability events. To demonstrate the efficiency of the army ants algorithm, we performed atom-diatom scattering calculations on a model system involving weakly coupled electronic states. Fully converged quantum mechanical calculations were performed, and the probabilities for nonadiabatic reaction and nonreactive deexcitation (quenching) were found to be on the order of 10(-8). For such low-probability events the anteater sampling scheme requires a large number of trajectories ( approximately 10(10)) to obtain good statistics and converged semiclassical results. In contrast by using the new army ants algorithm converged results were obtained by running 10(5) trajectories. Furthermore, the results were found to be in excellent agreement with the quantum mechanical results. Sampling errors were estimated using the bootstrap method, which is validated for use with the army ants algorithm.     

MECHANISMS OF 1,2-DIOXETANE DECOMPOSITION: THE ROLE OF ELECTRON TRANSFER

Abstract— The chemiluminescence from the cleavage of a number of 1,6-diaryl-2,5,7,8-tetraoxabicyclo[4.2.0]octanes 1 has been examined. The ease of oxidation of (object) the aryl moiety strongly influences both the stability and chemiluminescence efficiency of these 1,2-dioxetanes. When Ar is difficult to oxidize, 1 is comparable in stability to simple. alkyl-substituted 1,2-dioxe-tanes and affords triplet excited states in moderate yield. Both biradical and concerted cleavage mechanisms have been suggested to explain this behavior. However, when Ar is a readily oxidized group, 1 is substantially destahilized and gives excited singlet states in high yield. In this instance 1 is analogous to a number of bioluminescent systems. Cleavage mechanisms involving intramolecular electron transfer are proposed to account for this observation. In certain cases thermolysis of 1 occurs by both types of mechanism in competition, and the electron transfer mechanism may be selectively catalyzed by polar, protic media.     

Synthesis and photolysis of doxyl derivatives of 5β-androstan-3-ones

In an unsuccessful attempt to effect remote functionalization at C9, 4,4-dimethyloxazolidine-N-oxyl (doxyl) derivatives at C3 of 5β-androstan-3,17-dione and 5β-androstan-17β-ol-3-one were prepared and photolyzed. The former doxyl yielded its C13 stereoisomer; the latter was converted very slowly to intractable material.     

Separation of (Z)- and (E)-isomers of thioxanthene and dibenz[b,e]oxepin derivatives with calixarenes and resorcinarenes as additives in nonaqueous capillary electrophoresis

Five acidic calix[4]arenes with carboxylic or sulfonic groups at either the upper or lower rim of the cavity and one resorc[4]arene were investigated to separate three thioxanthenes (flupentixol, clopenthixol, chlorprothixene) and a dibenz[b,e]oxepin derivative (doxepin) with cis-/trans-isomerism by nonaqueous capillary electrophoresis (NACE). Partial filling of the capillary with the UV-absorbing selectors led to a low detection limit and an advantageous signal-to-noise ratio (S/N). A sufficient electrophoretic mobility of the calixarenes towards the anode was necessary to outweigh the oppositely directed electroosmotic flow (EOF). This depended from the functional groups, the dissociation and the hydrodynamic radius of the cyclophanes. In contrast, the resorcinarene was useable only by addition of sodium dodecyl sulfate (SDS) because only the complex of the two selectors had an anodic apparent electrophoretic mobility. p-Sulfonyl-calix[4]arene (ss-a1) was the most capable selector for all E/Z-isomers with maximal alpha-values ranging from 1.056 for doxepin to 1.224 for chlorprothixene. This was due to the sufficient migration in reversed direction to the EOF even at low pH* values of 3.0. Otherwise, electrostatic as well as hydrophobic interactions with the positively charged isomers seem to contribute to a superior recognition. Increasing the concentration up to 15 mM ss-a1 and using acidic media (pH* 5.0) led to high separation efficiency. Changing the organic solvent provides a powerful tool to improve selectivity with N,N-dimethylformamide-methanol (DMF-MeOH)-mixtures for thioxanthenes. Further electrophoretic parameters were optimized, such as the concentration of the electrolytes, the addition of SDS, the kind of electrolytes and the voltage. Distinct differences in selectivities were found between the derivatives with thioxanthene and dibenzo[b,e]oxepin ring system, respectively. Further, the different basic side chain was responsible for the different selectivity at higher pH* values. In contrast, the substitution at position 2 of the thioxanthenes played a secondary role. Based on the studies of single parameters a method for a simultaneous separation of the four pairs of isomers within 13 min was developed.     

Dialysis-solid-phase extraction combined on-line with non-aqueous capillary electrophoresis for improved detectability of tricyclic antidepressants in biological samples

Dialysis-solid-phase extraction (SPE) sample pretreatment is combined on-line with non-aqueous capillary electrophoresis for the determination of tricyclic antidepressants in urine and serum. After clean-up and enrichment, the water is removed from the sample matrix and the analytes are eluted from the cartridge by means of an organic solvent. Next, the eluate is transported to the capillary and the injection is performed electrokinetically. This injection, which does not suffer from an adverse sample matrix effect because of the SPE step, results in further analyte concentration. The detection limits are in the 0.02-0.1 microg/ml range and the day-to-day repeatabilities are between 2.5 and 9.5%, which is quite satisfactory.     

Preparative Separation and Analysis of Complex Mixtures of Leucomycins and Desmycarosyl Leucomycins Using HPLC and Mass Spectrometry

Composition and hydrolysis products of a biotechnical available complex of macrolides were analyzed by HPLC and ESI-CID-MSⁿ. Major components are leucomycin-type antibiotics (leucomycins A₁ (5), A₇ (3), A₉ (2), 9-desoxy-9-oxo-turimycin H₃ (4) and niddamycin B (6). Hydrolysis of the complex mixture yielded 9-, 13-isoforocidins (7, 8, 9, 11) and 9-oxo-forocidin (10). A preparative separation procedure was elaborated furnishing compounds 3 - 11 for semisynthetic experiments.Prof. Dr. Udo Gräfe deceased on 14.2.2003. For obituarity see: Schlegel B (2003) J Peptide Sci 9: 661–661.     

Regioselective hydroborations of methylvinylchlorosilanes

The regioselectivity of the hydroboration of the methylchlorovinylsilanes, Cl_nMe_3?nSiCHCH₂ (n= 0 ? 3), has been investigated using BH₃←THF, 9-BBN, disiamyl- and dicyclohexylborane. Methylation of the adducts with methylmagnesium bromide is complicated by formation of tetraalkylboronates. Alkaline hydrogen peroxide oxidation of the boronates gives reasonable yields of the corresponding α- and β-trimethylsilylethanols forn= 0 and 1. Forn= 2 and 3, conversion of the adducts to the corresponding α- and β- deuteroethylsilanes by treatment with excess sodium methoxide in methanol-0-d provides a more effective means of derivatization. Addition of the alkenes,n= 2 or 3, to excess BH₃←THF givesca. 90% of the α-boro-organo-chlorosilanes. For all of the alkenes, the dialkylboranes giveca. 80% of the β-boron adducts.     

Determination of trace elements in biological tissues by aluminum block digestion and spike-height flame atomic absorption spectrometry

A method for the determination of cadmium, copper, lead, and zinc in biological tissues using small volumes of digest is described. An aluminium heating block is used to digest samples and elements are determined by spike-height flame atomic absorption spectrometry. Interferences have been assessed and the sample decomposition procedure evaluated.     

Applied potential and radiotracer studies on poly(vinyl chloride) matrix ion-selective electrode membranes

This paper reports the effect of applied potentials on PVC matrix membranes containing (i) the barium ion-sensitive barium-Antarox C0880 complex and 2-nitrophenyl phenyl ether solvent mediator, and (ii) the calcium ion-sensitive Orion 92-20-02 phosphate-based calcium liquid ion-exchanger. Platinum electrodes were placed in solutions on each side of the membranes. The barium ion-sensitive membranes are unable to maintain stable current flows but the calcium ion-sensitive membranes are characterized by stable current flows over prolonged periods even after successive polarity reversals. Results are presented, from radiotracer experiments for permeation of ions through the membranes with and without an applied potential. No evidence was found for significant permeation of barium-133 ions through the barium ion-sensing membranes into an initially inactive solution, but it was found that barium-133 ions were incorporated into the membranes after removal of the applied potential. Permeation of sodium-22 ions through the calcium ion-sensing membranes occurred only to a limited extent in the presence of an applied potential and not at all in its absence, confirming electrode selectivity trends for calcium and sodium. Calcium-45 ions did not permeate the calcium ion-sensing membranes into an inactive counter-solution against the potential gradient, but on reversal of the polarity, permeation occurred to a far greater extent than in the absence of an applied potential. These differences in behaviour are compatible with the more complicated membrane pathways of the barium ion-sensing membranes, imposed by the complexing of barium ions by the ethyleneoxy units of Antarox C0880 in a tight helical conformation. The calcium ion-sensing membranes are much less constrained, thus permitting more facile replacement of the calcium ions in the membrane by ions from solution.