Selective Benzylic Bromination of 2-Methylnaphthalene

A practical synthesis of 2-(bromomethyl)naphthalene (1), by selective benzylic bromination of 2-methylnaphthalene (2), with bromine in heptane in the presence of lanthanum acetate hydrate is described.     

Scope and Applicability of an Expedient Synthesis Leading to Polysubstituted 3‐(Carboxyphenyl)pyrroles

A convenient three‐step route toward a functionalized pyrrole building block for novel anti‐inflammatory agents is reported. In contrast to previous strategies, the present approach focuses on inexpensive starting materials and application on a multigram scale. A high degree of functional diversity is demonstrated in various derivatives, and the scope and limitations of this route are discussed. Complementary to the described tetrasubstituted pyrroles, a novel ring‐closure protocol based on the Feist–Benary condensation affords trisubstituted analogues.     

Hydrated Rare Earth Structural Networks containing the Phenylene‐1, 2‐dioxydiacetate (PDDA) Ligand

Reaction of LnCl₃ with Na₂(PDDA) (PDDA = phenylene‐1, 2‐dioxydiacetate) in a 1 to 2 mol ratio in aqueous solution yielded [Ln₂(PDDA)₃(H₂O)₆] · 2H₂O, structurally characterized for Ln = Ce ( 1 ), Sm ( 2 ) (redetermination), Tb ( 3 ) and Y ( 4 ) in a monoclinic C2/c array, a second related structural form [orthorhombic, Pbcn] being obtained for Tb ( 5 ), Ho ( 6 ) and Er ( 7 ). The ‘domains of existence' of these two previously described forms are now extended to Ce–Dy, Y, and Eu–Er, respectively. Reaction under the same conditions for the heavier Yb³⁺ ion yielded [Yb₂(PDDA)₃(H₂O)₆]_(∞|∞) · 4H₂O ( 8 ), orthorhombic, Pbca. In the case of Ln = La the bimetallic species [NaLa(PDDA)₂(H₂O)₂]_(∞|∞) · 4H₂O ( 9 ) was obtained, while reaction of LnCl₃ with Na₂(PDDA) in a 1 to 3 mol ratio led to the isolation of the isotypic (monoclinic, P2₁/c) [NaLn(PDDA)₂(H₂O)₂]_(∞|∞) · 4H₂O) for Ln = Ce ( 10 ) and Sm ( 12 ). With the smaller Ln = Yb, the more definitively bimetallic [NaYb(PDDA)₂(H₂O)₂]_(∞|∞) · 3H₂O ( 13 ) (triclinic, P$\bar{1}$ )) was obtained, the trihydrate solvation ascribed differing from that recorded (dihydrate) in a cosynchronous report.     

Synthesis and fluorescence properties of DMCX+—a stable oxygen-bridged [4]helicenium dye

A one-step synthesis of the stable [4]helicenium dye, 1,13-dimethoxy-chromeno[2,3,4-kl]xanthenium hexafluorophosphate (DMCX⁺) from the readily available tris(2,6-dimethoxyphenyl)carbenium ion is reported. The crystal structure, the chemical stability, and dye properties of the DMCX⁺ helicenium system are described.     

Rotamer decomposition and protein dynamics: Efficiently analyzing dihedral populations from molecular dynamics

Molecular mechanics methods have matured into powerful methods to understand the dynamics and flexibility of macromolecules and especially proteins. As multinanosecond to microsecond length molecular dynamics (MD) simulations become commonplace, advanced analysis tools are required to generate scientifically useful information from large amounts of data. Some of the key degrees of freedom to understand protein flexibility and dynamics are the amino acid residue side chain dihedral angles. In this work, we present an easily automated way to summarize and understand the relevant dihedral populations. A tremendous reduction in complexity is achieved by describing dihedral timeseries in terms of histograms decomposed into Gaussians. Using the familiar and widely studied protein lysozyme, it is demonstrated that our approach captures essential properties of protein structure and dynamics. A simple classification scheme is proposed that indicates the rotational state population for each dihedral angle of interest and allows a decision if a given side chain or peptide backbone fragment remains rigid during the course of an MD simulation, adopts a converged distribution between conformational substates or has not reached convergence yet. © 2012 Wiley Periodicals, Inc.     

Comment on “Extending Hirshfeld‐I to bulk and periodic materials”

In recent years, several methods have been developed that partition the electron density among atoms using spherically symmetric atomic weights. D. E. P. Vanpoucke, P. Bultinck, and I. Van Driessche (J. Comput. Chem. 2012, doi: 10.1002/jcc.23088) recently reported a periodic implementation of the Hirshfeld‐I method that uses a combination of Becke‐style and uniform integration grids and modified atomic reference densities to compute net atomic charges in periodic materials. Herein, this method is discussed in the context of earlier periodic implementations of the Hirshfeld‐I method, the Iterated Stockholder Atoms method, and the density derived electrostatic and chemical method.     

A new mathematical model for the enzymatic kinetic resolution of racemates

A mathematical model is presented for the kinetic resolution of racemates. It takes all intermediate binding steps into account and assumes that such steps are reversible. The model describing dynamics of the chiral reaction products consists of two nonlinear differential equations. With this model, the enantioselectivity of enzyme has been studied. Mathematical and numerical simulation of the model show that there are several ways to control the enantiomeric ratio (E) but the affinity and the binding rates of the intermediate enzyme complex to the racemic substrates are the key steps for the enzyme enantioselectivity.     

The stereochemistry of glycolipids. A key for understanding membrane functions?

A Commentary on the paper ”Studies on liquid‐crystalline glycosides" by Volkmar Vill, Thomas Böcker, Joachim Thiem and Fred Fischer. First published in Liquid Crystals, 6, 349‐356 (1989).