Stable carbon isotopes in dissolved inorganic carbon: extraction and implications for quantifying the contributions from silicate and carbonate weathering in the Krishna River system during peak discharge

We present a comparative study of two offline methods, a newly developed method and an existing one, for the measurement of the stable carbon isotopic composition (δ¹³C) of dissolved inorganic carbon (DIC; δ¹³C_DIC) in natural waters. The measured δ¹³C_DIC values of different water samples, prepared from laboratory Na₂CO₃, ground and oceanic waters, and a laboratory carbonate isotope standard, are found to be accurate and reproducible to within 0.5 ‰\ (1σ). The extraction of CO₂ from water samples by these methods does not require pre-treatment or sample poisoning and can be applied to a variety of natural waters to address carbon cycling in the hydrosphere. In addition, we present a simple method (based on a two-end-member mixing model) to estimate the silicate-weathering contribution to DIC in a river system by using the concentration of DIC and its δ¹³C. This approach is tested with data from the Krishna River system as a case study, thereby quantifying the contribution of silicate and carbonate weathering to DIC, particularly during peak discharge.     

Synthesis and characterization of 9-(4-nitrophenyl)3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione and its methoxyphenyl derivative

9-(4-Nitrophenyl)-3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione (NTHA) crystallizes in orthorhombic space group P2₁2₁2₁ with a = 5.9716(1) Å, b = 18.0476(3) Å, c = 19.2445(2) Å, V = 2074.04(5) ų, Z = 4, D_cal = 1.263 Mg m^?3 and R = 0.0521 (wR = 0.1326) for 4078 observed reflections. 9-(4-Nitrophenyl)-10-(4-methoxyphenyl)-3,3,6,6-tetramethyl-3,4,6,7,9,10-hexahydro-1,8(2H,5H) acridinedione NMTHA, crystallizes in monoclinic space group P2₁/c with a = 15.669(5) Å, b = 10.652(4) Å, c = 18.337(6) Å, β = 108.25(1)^°, V = 2906.66(2) ų, Z = 4, D_cal = 1.245 Mg m^?3 and R = 0.0725 (wR = 0.1847) for 5105 observed reflections. The experimental values are compared with the theoretical values calculated based on the semiemperical methods. The structures are stabilized by N–H?sO and C–H?sO types of intermolecular interactions in addition to van der Waals forces.     

Carbenoids. Metal assisted ionization

Treatment of (S)-(+)-1-chloro-2,2-diphenylcyclopropane with n-butyllithium at ?25°C yield, $\text{inter}$$\text{alia}$, (R)-(?)-1-$\text{n}$-butyl-2, 2-diphenylcyclopropane with overall inverted configuration. A metal assisted ionization mechanism is proposed.     

Amide-nitrophenyl based colorimetric receptors for selective sensing of fluoride ions

New chromogenic receptors containing 2-nitrophenyl or 3,5-dinitrophenyl groups appended to the amide or in secondary amine positions have been synthesized and characterized. Upon addition of fluoride to two of the receptors in acetonitrile, the solution acquired a yellow colour. The third receptor showed an intense purple colour with fluoride in acetonitrile and the appearance of the purple colour can be detected by the naked eye at parts per million level. The addition of chloride, bromide and iodide to the receptors did not induce any colour. Thus the receptors can act as fluoride ion sensors even in the presence of other halide ions.     

Potassium yttrium hexaniobium octadecachloride,KYNb6Cl18

The structure of potassium yttrium hexaniobium octadeca­chloride is built of anionic [Nb₆Cl₁₂ⁱCl₆^a]⁴⁻ cluster units (where `i' and `a' denote inner and outer ligands, respectively), linked together by K⁺ and Y³⁺ cations. The K⁺ cations occupy half of the tetrahedral vacancies in the face‐centered cubic lattice of cluster units, and are coordinated by 12 chloride ligands. The Y atom is located in an octahedral site and is bonded to six outer chloride ligands.     

磁性纳米颗粒固定化细菌纤维素酶的活性和稳定性

在氨水溶液中进行Fe+2和Fe+3离子共沉淀并水热处理后制得磁性纳米颗粒Fe3O4,通过戊二醛活化将纤维素酶固定于其上。采用基于响应面法的Box-Behnken法(BBD)优化了制备条件,如磁性纳米颗粒浓度、戊二醛浓度、酶浓度和交联时间。 BBD分析结果表明,用实验数据可合理调节二次模型。利用生成的基于统计数据的等高线评价了响应面的变化,以理解纳米颗粒和酶活性之间的关系。运用扫描电镜、X射线衍射和红外光谱表征了纳米颗粒上酶的尺寸、结构、形貌和结合情况。采用诸如pH值、温度、重复使用性和存储能力分析了固定化纤维素酶的活性和稳定性。发现固定后的纤维素酶表现出更好的稳定性和活性。     

Supramolecular patterns in benzyladeninium p‐toluenesulfonate

In the title compound (systematic name: 6‐benzylamino‐7H‐purin‐3‐ium p‐toluenesulfonate), C₁₂H₁₂N₅⁺·C₇H₇O₃S⁻, the adenine moiety exists as the N³‐protonated N⁷—H tautomer. The dihedral angle between the adenine ring system and the phenyl ring is 82.76 (11)°. Two of the sulfonate O atoms form C—H...O and N—H...O hydrogen bonds with the H atoms on the N and C atoms in the 3‐ and 8‐positions, respectively, of the adenine moiety, leading to a zigzag chain. Two antiparallel zigzag chains are linked by the remaining sulfonate O atom through Hoogsteen‐site H atoms (i.e. those on the N atoms in the 6‐ and 7‐positions) of the adenine moiety, leading to a double chain. An annulus formed by a pair of inversion‐related anions and cations has been identified. An intramolecular toluenesulfonate–phenyl C—H...π interaction is also present.     

Folding of human telomerase RNA pseudoknot using ion-jump and temperature-quench simulations

Globally RNA folding occurs in multiple stages involving chain compaction and subsequent rearrangement by a number of parallel routes to the folded state. However, the sequence-dependent details of the folding pathways and the link between collapse and folding are poorly understood. To obtain a comprehensive picture of the thermodynamics and folding kinetics we used molecular simulations of coarse-grained model of a pseudoknot found in the conserved core domain of the human telomerase (hTR) by varying both temperature (T) and ion concentration (C). The phase diagram in the [T,C] plane shows that the boundary separating the folded and unfolded state for the finite 47-nucleotide system is relatively sharp, implying that from a thermodynamic perspective hTR behaves as an apparent two-state system. However, the folding kinetics following single C-jump or T-quench is complicated, involving multiple channels to the native state. Although globally folding kinetics triggered by T-quench and C-jump are similar, the kinetics of chain compaction are vastly different, which reflects the role of initial conditions in directing folding and collapse. Remarkably, even after substantial reduction in the overall size of hTR, the ensemble of compact conformations are far from being nativelike, suggesting that the search for the folded state occurs among the ensemble of low-energy fluidlike globules. The rate of unfolding, which occurs in a single step, is faster upon C-decrease compared to a jump in temperature. To identify "hidden" states that are visited during the folding process we performed simulations by periodically interrupting the approach to the folded state by lowering C. These simulations show that hTR reaches the folded state through a small number of connected clusters that are repeatedly visited during the pulse sequence in which the folding or unfolding is interrupted. The results from interrupted folding simulations, which are in accord with non-equilibrium single-molecule folding of a large ribozyme, show that multiple probes are needed to reveal the invisible states that are sampled by RNA as it folds. Although we have illustrated the complexity of RNA folding using hTR as a case study, general arguments and qualitative comparisons to time-resolved scattering experiments on Azoarcus group I ribozyme and single-molecule non-equilibrium periodic ion-jump experiments establish the generality of our findings.