Synthesis of 2′-Deoxy-5-(isothiazol-5-yl)uridine and Its Interaction with the HSV-1 Thymidine Kinase

2′-Deoxy-5-(isothiazol-5-yl)uridine ( 12 ) was synthesized starting from 2′-deoxy-5-iodouridine using a Pd-catalysed cross-coupling reaction with propiolaldehyde diethyl acetal followed by deprotection and ring closure using thiosulfate. 2′-Deoxyuridine 12 has a particular place among the 5-heteroaryl-substituted 2′-deoxyuridines in that it has a high affinity for herpes simplex virus type 1 (HSV-1)-encoded thymidine kinase (TK) without antiviral activity. Biochemical studies revealed that 12 is a substrate for viral TK. We further investigated the interaction of 12 with the HSV-1 thymidine kinase. The conformation of 12 in solution was established by NMR spectroscopy. The most stable conformer 12A has the S-atom of the isothiazole ring placed in the neighbourhood of the C(4)?O group of the pyrimidine moiety. The compound was docked in its most stable conformation in the active site of HSV-1 TK and subjected to energy minimization. This demonstrated that the isothiazole moiety binds in a cavity lined by the side chains of Tyr-132, Arg-163, Ala-167, and Ala-168 and that the C(3) atom of the isothiazole moiety is located in close proximity of the phenolic O-atom of Tyr-132 and the aliphatic part of the Arg-163 side chain.     

Kiesels?urebestimmung durch Destillation von H2SiF6 in einer Silberapparatur

Znsammenfassung Die Arbeit behandelt die Abtrennung der Kieselsäure von TiO₂, Al₂O₃, V₂O₅ und ZrO₂ durch Verflüchtigung von H₂SiF₆ in einer Silberapparatur. Die anschließende photometrische SiO₂-Bestimmung erfolgt nach der Silicomolybdänblaumethode. Es ergibt sich außerdem die Möglichkeit, Kieselsäure von Metallsalzen und von weiteren Oxyden zu trennen, die Fluß- und Schwefelsäure nicht in stärkerem Maße binden.II. Teil der Dissertation von Th. Keil, Gießen 1958. — I. Teil: diese Z. 165, 188, (1959).Wir danken der Titangesellschaft m.b.H., Leverkusen, für das Überlassen der Silberapparatur und überhaupt für das große Interesse, das sie dieser Arbeit entgegengebracht hat.     

A crystallite packing model for pseudoboehmite formed during the hydrolysis of trisecbutoxyaluminium to explain the peptizability

A model for pseudoboehmite crystallite packing formed during the hydrolysis of trisecbutoxyaluminium is postulated. The model describes platelike crystallites of pseudoboehmite stacked in a sharing edges only configuration. With this type of stacking, the pore sizes detected are approximately equal to the crystallite sizes of the hydrolysates. The hydrolysates age via a dissolution re-precipitation reaction. This increases the size of the crystallite size of the pseudoboehmite formed, speeding peptization by allowing nitrate ions to enter pores and access the surfaces of the crystallites. This type of model also allows an explanation for the peptization kinetics of systems containing sec-butanol formed during the hydrolysis of trisecbutoxyaluminium.     

Size effect on surface tension of small droplets

We discuss the influence of the effect of droplet size on the surface tension γ and develop a self-consistent method to derive a relation between γ and the droplet radius r. Referring our expression for γ(r) to the surface of tension we recover Tolman's result.     

Synthesis of 3-nitro- and 3-aminoquinoline-2,4-diones. An unexpected route to 3-hydroxyquinoline-2,4-diones

Nitration of 3-substituted-4-hydroxy-2(1H)-quinolones 1 with nitric acid leads either to 3-nitro- 2 or 3-hydroxyquinolinediones 3 , depending on the reaction conditions. 3-Substituted-3-hydroxyquinolinediones 3 are also obtained by oxidative hydroxylation with peracetic acid. Amination of 3-substituted-3-chloroquinolinediones 4 with ammonium hydroxide predominantly leads again to 3-substituted-3-hydroxyquinolinediones 3 , only in one case the 3-aminoquinolinedione 5 could be isolated. With morpholine or pyridine as amines the expected 3-aminoquinolinediones 6 and 7 were obtained.     

Homo- and heteroflocculation of papermaking fines and fillers

The effects of cationic polyethylenimine (PEI) on the colloidal stability of anionic fines (microcrystalline cellulose or thermomechanical fines), fillers (clay) and their mixtures in deionized and tap water were investigated, using a photometric dispersion analyzer. Measurements confirmed that PEI flocculates all used materials by charge neutralization. As expected, higher additions of PEI lead to electrostatic stabilization of microcellulose and clay suspensions, but it was not possible to stabilize the suspension of fines using high additions of PEI. This is ascribed to the mechanical entanglements of fibrillar fines. In tap water, much more PEI is needed to reach optimum flocculation conditions than in deionized water. Heteroflocculation between PEI-coated clay and fines takes place with a rate which, for high fines concentration and a constant clay concentration, is independent of fines concentration. A theoretical model for the heteroflocculation of fines with PEI-coated clay has been developed, which explains the observed trends. In essence, clay particles can act as bridging agents for fines flocculation.     

Salt-induced acceleration of chemical reactions in cellulose nanopores

Chemical reactions in charged nanopores, such as present in cellulose fibers, can be accelerated by adding an inert salt, that does not participate in the reaction. Due to a Donnan-like equilibrium between ions inside and outside the pores, the concentration of co-ions in the nanopores (having a charge of the same sign as that of the pore wall), is lower than the concentration in the bulk. The co-ion concentration in pores can be increased by adding an inert salt, which shifts the Donnan equilibrium. The increased concentration of reactants in pores results in faster reaction kinetics. Reactions of cellulose with periodate confirm these predictions.     

NIFTy 3 – Numerical Information Field Theory: A Python Framework for Multicomponent Signal Inference on HPC Clusters

NIFTy , “Numerical Information Field Theory,” is a software framework designed to ease the development and implementation of field inference algorithms. Field equations are formulated independently of the underlying spatial geometry allowing the user to focus on the algorithmic design. Under the hood, NIFTy ensures that the discretization of the implemented equations is consistent. This enables the user to prototype an algorithm rapidly in 1D and then apply it to high‐dimensional real‐world problems. This paper introduces NIFTy  3, a major upgrade to the original NIFTy  framework. NIFTy  3 allows the user to run inference algorithms on massively parallel high performance computing clusters without changing the implementation of the field equations. It supports n‐dimensional Cartesian spaces, spherical spaces, power spaces, and product spaces as well as transforms to their harmonic counterparts. Furthermore, NIFTy  3 is able to handle non‐scalar fields, such as vector or tensor fields. The functionality and performance of the software package is demonstrated with example code, which implements a mock inference inspired by a real‐world algorithm from the realm of information field theory. NIFTy  3 is open‐source software available under the GNU General Public License v3 (GPL‐3) at https://gitlab.mpcdf.mpg.de/ift/NIFTy/tree/NIFTy_3 .