Locked nucleic acid (LNA) recognition of RNA: NMR solution structures of LNA:RNA hybrids

Locked nucleic acids (LNAs) containing one or more 2'-O,4'-C-methylene-linked bicyclic ribonucleoside monomers possess a number of the prerequisites of an effective antisense oligonucleotide, e.g. unprecedented helical thermostability when hybridized with cognate RNA and DNA. To acquire a detailed understanding of the structural features of LNA giving rise to its remarkable properties, we have conducted structural studies by use of NMR spectroscopy and now report high-resolution structures of two LNA:RNA hybrids, the LNA strands being d(5'-CTGAT(L)ATGC-3') and d(5'-CT(L)GAT(L)AT(L)GC-3'), respectively, T(L) denoting a modified LNA monomer with a thymine base, along with the unmodified DNA:RNA hybrid. In the structures, the LNA nucleotides are positioned as to partake in base stacking and Watson-Crick base pairing, and with the inclusion of LNA nucleotides, we observe a progressive change in duplex geometry toward an A-like duplex structure. As such, with the inclusion of three LNA nucleotides, the hybrid adopts an almost canonical A-type duplex geometry, and thus it appears that the number of modifications has reached a saturation level with respect to structural changes, and that further incorporations would furnish only minute changes in the duplex structure. We attempt to rationalize the conformational steering induced by the LNA nucleotides by suggesting that the change in electronic density at the brim of the minor groove, introduced by the LNA modification, is causing an alteration of the pseudorotational profile of the 3'-flanking nucleotide, thus shifting this sugar equilibrium toward N-type conformation.     

Superconducting transition temperatures of amorphous binary alloy systems based on Bi,Pb, Ga and Be

Quench condensed binary alloy films are produced by evaporation from two separated furnaces. The films contain the whole composition range of the respective alloy system in well defined arrangement.T _c is measured as a function of concentration. Eight predominantly amorphous alloy systems are studied: Bi—Ga, Pb—Ga, Pb—Bi, Be—Bi, Be—Pb, Be—Ga, Be—Al, Be—Li. In Bi—Ga and Pb—GaT _c is a linear function of concentration in the amorphous composition range. In Pb—BiT _c has a maximum. All Be-alloys show lower transition temperatures than pure quench condensed Be. Except for Be—Li all systems have aT _c minimum. The experiments are compared to aT _c calculation using tunelling spectroscopy data. Except for the Be-alloys the agreement is satisfying.     

Matrix Isolation ir Spectra of Methyl Acetate II.Stoechiometry of Methyl Acetate…H2O Complexes in AR Matrices. Comparison with Methyl Benzoate…H20

The earlier reported matrix system methylacetate/ H₂O/Ar has been reinvestigated by IR spectroscopy. The complex band pattern of the ester ν _c=0 and the water ν₃, ν₁ and ν₂ modes can be explained by the coexistence of 1:1, linear 1:2 and linear 2:1 H-bonded complexes. The study of methyl benzoate/H₂O/Ar supports the proposed interpretation.     

Trace-Level Determination of Phenol by Liquid Chromatography with On-Line Precolumn Technology and Fluorescence Detection

Abstract

A strongly basic anion-exchange resin is used for the trace enrichment and automated sample handling of phenol, with subsequent determination by reversed-phase liquid chromatography with fluorescence detection. Because of the presence of high concentrations of ionic compounds in the water samples tested, phenol is first trapped on a relatively long precolumn filled with a highly hydrophobic packing material; during this step, (in) organic anions which are not retained, are flushed to waste. In the next step, phenol is desorbed from this column at high pH and sorbed in a small zone (“peak compression”) on a short precolumn containing the anion exchanger.

In the analysis of tap and river water samples, the detection limit was found to be 10ppt (1:10¹¹).     

Schistosomiasis Chemotherapy

After malaria, schistosomiasis (or bilharzia) is the second most prevalent disease in Africa, and is occurring in over 70 countries in tropical and subtropical regions. It is estimated that 600 million people are at risk of infection, 200 million people are infected, and at least 200 000 deaths per year are associated with the disease. All schistosome species are transmitted through contact with fresh water that is infested with free‐swimming forms of the parasite, which is known as cercariae and produced by snails. When located in the blood vessels of the host, larval and adult schistosomes digest red cells to acquire amino acids for growth and development. Vaccine candidates have been unsuccessful up to now. Against such devastating parasitic disease, the antischistosomal arsenal is currently limited to a single drug, praziquantel, which has been used for more than 35 years. Because the question of the reduction of the activity of praziquantel was raised recently, it is thus urgent to create new and safe antischistosomal drugs that should be combined with praziquantel to develop efficient bitherapies.     

Internal Biokinetic Behaviour of Molybdenum in Humans Studied with Stable Isotopes as Tracers

Abstract

Although molybdenum is considered to be an essential trace metal for humans, the knowledge about its metabolism is rather limited. The present study was aimed at the assessment of biokinetics following intravenous injection of trace amounts of ⁹⁵Mo or ⁹⁶Mo into five healthy volunteers. In a total of 11 investigations, the plasma clearance up to eight hours and the urinary excretion for at least three days after the injection were evaluated. The tracer concentrations were determined by proton nuclear activation analysis in blood plasma and by thermal ionization mass spectrometry in urine samples respectively. In all subjects, the plasma clearance is much faster than expected from the literature. The data obtained for the plasma clearance of the tracer can reasonably be fitted by a two exponential equation. The half times of the fast component range between 4 and 70 minutes and for the slow component between 3 and 30 hours. The urinary excretion of the injected tracer seems also to be faster than expected and the fractions lost are higher for larger doses administered. For the smallest dose given, 34% of the injected tracer were excreted within one day whereas for the four times larger dose about 60% were lost. These findings on urinary excretion are in agreement with recently published results.