Twelve hours exposure to inhomogeneous high magnetic field after logarithmic growth phase is sufficient for drastic suppression of Escherichia coli death.

When Escherichia coli B was aerobically grown at 43 degrees C in a medium whose concentration was one-fourth that of the Luria-Bertani (LB) medium supplemented with 1.5 g/l of glutamic acid, drastic cell death was observed after the end of the logarithmic growth phase. However, when the same experiment was conducted under inhomogeneous 5.2-6.1 T magnetic field, cell death was extremely suppressed and the ratio of viable cell number under high magnetic field to that under geomagnetic field reached as much as 100,000. When the magnetic field exposure was restricted to 12 h after the logarithmic growth phase, a similar high degree of suppressive effect on the death was observed. The findings that the amount of sigma S protein encoded by the rpoS gene under the high magnetic field was larger than that under the geomagnetic field, and that the magnetic field effect disappeared when the rpoS gene-deficient strain was cultivated under the high magnetic field, suggest the interaction of magnetic field with a stationary phase specific gene.     

The DNA polymerase activity of Pol ε holoenzyme is required for rapid and efficient chromosomal DNA replication in Xenopus egg extracts

Background  

DNA polymerase ε (Pol ε) is involved in DNA replication, repair, and cell-cycle checkpoint control in eukaryotic cells. Although the roles of replicative Pol α and Pol δ in chromosomal DNA replication are relatively well understood and well documented, the precise role of Pol ε in chromosomal DNA replication is not well understood.     

Coupling of Alkynes on a Pd-Pd Bond to Generate an Electrophilic µ-Butenediylidene Moiety

The first dipalladium μ-PPh(3) complex (1) was obtained by the facile loss of two CH(3)CN ligands from [Pd(2)(PPh(3))(2)(CH(3)CN)(4)](PF(6))(2) in CH(2)Cl(2). Coupling of p-tolylacetylene (p-TolC identical withCH) with 1 or its precusor afforded the μ-butenediylidene complex 2, treatment of which with CH(3)CN resulted in PPh(3) migration to give 3.     

FTIR detection of protonation/deprotonation of key carboxyl side chains caused by redox change of the Cu(A)-heme a moiety and ligand dissociation from the heme a3-Cu(B) center of bovine heart cytochrome c oxidase

FTIR spectral changes of bovine cytochrome c oxidase (CcO) upon ligand dissociation from heme a(3)() and redox change of the Cu(A)-heme a moiety (Cu(A)Fe(a)()) were investigated. In a photosteady state under CW laser illumination at 590 nm to carbonmonoxy CcO (CcO-CO), the C-O stretching bands due to Fe(a3)()(2+)CO and Cu(B)(1+)CO were identified at 1963 and 2063 cm(-)(1), respectively, for the fully reduced (FR) state [(Cu(A)Fe(a)())(3+)Fe(a3)()(2+)Cu(B)(1+)] and at 1965 and 2061 cm(-)(1) for the mixed valence (MV) state [(Cu(A)Fe(a)())(5+)Fe(a3)()(2+)Cu(B)(1+)] in H(2)O as well as in D(2)O. For the MV state, however, another band due to Cu(B)(1+)CO was found at 2040 cm(-)(1), which was distinct from the alpha/beta conformers in the spectral behaviors, and therefore was assigned to the (Cu(A)Fe(a)())(4+)Fe(a3)()(3+)Cu(B)(1+)CO generated by back electron transfer. The FR-minus-oxidized difference spectrum in the carboxyl stretching region provided two negative bands at 1749 and 1737 cm(-)(1) in H(2)O, which were apparently merged into a single band with a band center at 1741 cm(-)(1) in D(2)O. Comparison of these spectra with those of bacterial enzymes suggests that the 1749 and 1737 cm(-)(1) bands are due to COOH groups of Glu242 and Asp51, respectively. A similar difference spectrum of the carboxyl stretching region was also obtained between (Cu(A)Fe(a)())(3+)Fe(a3)()(2+)Cu(B)(1+)CO and (Cu(A)Fe(a)())(5+)Fe(a3)()(2+)Cu(B)(1+)CO. The results indicate that an oxidation state of the (Cu(A)Fe(a)()) moiety determines the carboxyl stretching spectra. On the other hand, CO-dissociated minus CO-bound difference spectra in the FR state gave rise to a positive and a negative peaks at 1749 and 1741 cm(-)(1), respectively, in H(2)O, but mainly a negative peak at 1735 cm(-)(1) in D(2)O. It was confirmed that the absence of a positive peak is not caused by slow deuteration of protein. The corresponding difference spectrum in the MV state showed a significantly weaker positive peak at 1749 cm(-)(1) and an intense negative peak at 1741 cm(-)(1) (1737 cm(-)(1) in D(2)O). The spectral difference between the FR and MV states is explained satisfactorily by the spectral change induced by the electron back flow upon CO dissociation as described above. Thus, the changes of carboxyl stretching bands induced both by oxidation of (Cu(A)Fe(a)()) and dissociation of CO appear at similar frequencies ( approximately 1749 cm(-)(1)) but are ascribed to different carboxyl side chains.     

An EXAFS study of Ag3AsS3 glass

The local structures of Ag₃AsS₃ glass at 80 and 300 K have been investigated by extended X-ray absorption fine structure analysis. By comparing the glass structure with that of Ag₃AsS₃ crystal (proustite), the possibility of ionic conduction by this glass is discussed. The local structure around an As atom in the glass is similar to that in the crystal. This fact suggest that, even in the glass structure, the As atoms from AsS₃ trigonal pyramids of shape similar to that in the crystal. The Ag---S distance (2.449 Å at 300 K) and the large root mean square displacement, σ, for the Ag---S atomic pairs in the glass, groups with a by the parameter fitting method, show that the Ag atoms are quite randomly distributed around the AsS₃ groups with a similar Ag---S distance to that in the crystal. Further, it is possible that the large thermal contribution to σ_Ag---S² for the glass may indicate the involvement of the Ag atoms in ionic conduction.     

Polarization in projectile fragmentation andg-factor measurements for neutron-rich nuclei

A method to produce beams of polarized unstable nuclei was developed, which fully exploits the advantageous features of the projectile fragmentation reaction. The method was applied tog-factor measurements of several neutron-rich nuclei. We present experimental results so far obtained and discuss capabilities and limitations the present polarization method has.     

Reidemeister torsion and lens surgeries on knots in homology 3-spheres II

We introduce the norm and the order of a polynomial and of a homology lens space. We calculate the norm of the cyclotomic polynomials, and apply it to lens surgery problem for a knot whose Alexander polynomial is the same as an iterated torus knot.     

Energy conversion by autonomous regulation of chaos: dynamical mechanism of loose coupling

Inspired by recent experiments of molecular motors, a dynamical systems model for a flexible machine is proposed which converts injected energy to output directional motion. The output amount is distributed broadly, and thus the coupling between input energy and output motion is loose, as in the experiments. This energy conversion is shown to be robust against the change of surrounding environment. Stability analysis on the fixed point solutions of the model is presented, which suggests that transient chaotic motion, induced by temporal three-body motion, is relevant to the energy conversion.