Low-energy electron scattering with the purine bases of DNA/RNA using the R-matrix method

R-matrix calculations on electron collisions with the purine bases found in DNA and RNA (i.e., adenine and guanine) are presented. Resonant anion states of these systems are identified by employing different approximation levels of ab initio theoretical methods, such as the static exchange, the static exchange plus polarization, and the close-coupling methods. The results are compared with other available calculations and experiments. All of these ab initio approximations, which we refer to as a scattering "model," give four shape resonances of (2)A' (π) symmetry within the energy range of 10 eV for both molecules. For adenine, the most sophisticated method, the close-coupling model, gives two very narrow (2)A' (σ) symmetry Feshbach-type resonances at energies above 5 eV. Quantitative results for the total elastic and electronic excitation cross sections are also presented.     

Different growth regimes on prepatterned surfaces: consistent evidence from simulations and experiments

Molecule deposition on a prepatterned substrate is a recently developed technique to generate desired structures of organic molecules on surfaces via self-organization. For the case of prepatterned stripes, the time-resolved process of structure formation is studied via lattice Monte Carlo simulations. By systematic variation of the interaction strength, three distinct growth regimes can be identified: localized growth, bulge formation, and cluster formation. All three growth regimes can be recovered in the experiment when choosing appropriate organic molecules. Some key microscopic observables, reflecting the properties of the structure formation, display a non-monotonous dependence on the interaction strength.     

An Efficient Approach for Preparing Giant Polypeptide Triblock Copolymers by Protein Dimerization

An efficient and convenient approach for preparing a giant polypeptide–poly(ethylene oxide) triblock copolymer architecture of defined structure and composition is reported. This copolymer consists of two long polypeptide chains derived from bovine serum albumin of distinct lengths with stabilizing poly(ethylene oxide) side‐chains, a connecting poly(ethylene oxide) block, and the presence of secondary structure elements along the polypeptide backbone. It is synthesized from the abundant plasma protein serum albumin and the polypeptide backbone is fully biodegradable. This approach represents a convenient and efficient strategy for preparing giant polypeptide‐based block copolymers of defined structure via a semi‐synthetic strategy. Such high‐molecular‐weight, biodegradable copolymers are attractive for various biomedical applications     

New difference sets in nonabelian groups of order 100

In two groups of order 100 new difference sets are constructed. The existence of a difference set in one of them has not been known. The correspondence between a (100, 45, 20) symmetric design having regular automorphism group and a difference set with the same parameters has been used for the construction. © 2001 John Wiley & Sons, Inc. J Combin Designs 9: 424–434, 2001     

Radiation‐grafted ion‐exchange membranes: Influence of the initial matrix on the synthesis and structure

A series of commercial fluoropolymer films was irradiated with an electron beam, grafted with styrene, and sulfonated. The influence of the initial fluoropolymer on the grafting yields and the properties of the grafted and sulfonated membranes were investigated. The same synthesis procedure can be followed for most fluoropolymers and samples with a similar degree of grafting, and a homogenous polystyrene distribution can be prepared by varying the absorbed dose. The main difference among different fluoropolymer‐based membranes is the water uptake from liquid water that has a roughly linear dependence on the crystallinity of the sample. The more amorphous the initial material, the greater the water uptake. Mechanical properties of the membranes at 50% relative humidity differ less than those of the starting materials and are comparable to those of Nafion® 105. © 2001 John Wiley & Sons, Inc. J Polym Sci Part A: Polym Chem 39: 3008–3017, 2001     

Two isomorphous benzene­sulfon­amide crystal structures determined by intermolecular C—H⃛O,C—H⃛π and C—H⃛Cl interactions

The title compounds, N‐[5‐(4‐chloro­phenyl)­furan‐2‐yl­methyl]‐4‐methyl‐N‐(prop‐2‐ynyl)­benzene­sulfon­amide, (Ia), and N‐[5‐(2‐chloro­phenyl)­furan‐2‐yl­methyl]‐4‐methyl‐N‐(prop‐2‐ynyl)­benzene­sulfon­amide, (Ib), both C₂₁H₁₈ClNO₃S, have isomorphous crystal structures. The crystal packing is mainly determined by intermolecular C—H?O and C—H?π interactions. These interactions are very similar in (Ia) and (Ib). Additional intermolecular C—H?Cl interactions appear less important and are different in (Ia) and (Ib). The different positions of the Cl atoms result in small variations of the crystal packing of the two compounds.     

Reactions of GeCl2 with the Thiolate LiSC(SiMe3)3: From thf Activation to Insertion of GeCl2 Molecules into C−S Bonds

The reaction system GeCl₂ ⋅ dioxane/LiSTsi (Tsi=C(SiMe₃)₃) opens a fruitful area in germanium chemistry, depending on the stoichiometry and solvent used during the reaction. For example, the reaction of GeCl₂ ⋅ dioxane in toluene with two equivalents of the thiolate gives the expected germylene Ge(STsi)₂ in excellent yield. This germylene readily reacts with hydrogen and acetylene, however, in a non-selective way. By using an excess amount of the thiolate and toluene as the solvent, the germanide [Ge(STsi)₃][Li(thf)] is obtained. Performing the same reaction in thf leads to a C−H activation of thf to give (H₇C₄O)Ge[STsi](μ²-S)₂Ge[STsi]₂, in which the thf molecule is still intact. Using a sub-stoichiometric amount of the thiolate leads to the heteroleptic compound [ClGe(STsi)]₂ and to the insertion product (thf)Ge[S-GeCl₂-Tsi]₂, in which additional GeCl₂ molecules insert into the C−S bonds of Ge(STsi)₂. The synthesis and the experimentally determined structures of all compounds are presented together with first reactivity studies of Ge(STsi)₂.     

Similarities and Differences between Crystal and Enzyme Environmental Effects on the Electron Density of Drug Molecules

The crystal interaction density is generally assumed to be a suitable measure of the polarization of a low-molecular weight ligand inside an enzyme, but this approximation has seldomly been tested and has never been quantified before. In this study, we compare the crystal interaction density and the interaction electrostatic potential for a model compound of loxistatin acid (E64c) with those inside cathepsin B, in solution, and in vacuum. We apply QM/MM calculations and experimental quantum crystallography to show that the crystal interaction density is indeed very similar to the enzyme interaction density. Less than 0.1 e are shifted between these two environments in total. However, this difference has non-negligible consequences for derived properties.     

Cacaoidin,First Member of the New Lanthidin RiPP Family

Lantibiotics are ribosomally synthesized and post-translationally modified peptides (RiPPs) characterized by the presence of lanthionine or methyllanthionine rings and their antimicrobial activity. Cacaoidin, a novel glycosylated lantibiotic, was isolated from a Streptomyces cacaoi strain and fully characterized by NMR, mass spectrometry, chemical derivatization approaches and genome analysis. The new molecule combines outstanding structural features, such as a high number of d -amino acids, an uncommon glycosylated tyrosine residue and an unprecedented N,N-dimethyl lanthionine. This latter feature places cacaoidin within a new RiPP family located between lanthipeptides and linaridins, here termed lanthidins. Cacaoidin displayed potent antibacterial activity against Gram-positive pathogens including Clostridium difficile. The biosynthetic gene cluster showed low homology with those of other known lanthipeptides or linaridins, suggesting a new RiPP biosynthetic pathway.     

Analytical Uncertainty in Modern Quantitative TLC

JPC – Journal of Planar Chromatography – Modern TLC - Experiments and calculations show the importance of analytical management to reliable analytical results. A method with a...