Statistical mechanical treatment of protein conformation. III. Prediction of protein conformation based on a three-state model.

The method proposed for the evaluation of statistical weights in paper I, and the three-state model [alpha-helical (alpha), extended (epsilon), and other (c) states] formulated in paper II, have been used to develop a procedure to predict the backbone conformations of proteins, based on the concept of the predominant role played by shortrange interactions in determining protein conformation. Conformational probability profiles, in which the probabilities of formation of three consecutive alpha-helical conformations (triad) and of four consecutive extended conformations (tetrad) have been defined relative to their average values over the whole molecule, are calculated for 19 proteins, of which 16 had been used in paper I to evaluate the set of statistical weights of the 20 naturally occurring amino acids. By comparing these conformational probability profiles to experimental x-ray observations, the following results have been obtained: 80% of the alpha-helical regions and 72% of the extended conformational regions have been predicted correctly for the 19 proteins. The percentage of residues predicted correctly is in the range of 53 to 90% for the alpha-helical conformation and in the range of 63 to 88% for the extended conformation for the 19 proteins in the two-state models [alpha-helical (alpha) and other (c) states, and extended (epsilon) and other (c) states]. In the three-state model, the percentage of residues predicted correctly is in the range of 47% to 77 for 19 proteins. These results suggest that the assumption of the dominance of short-range interactions, on which the predictive scheme is based, is a reasonable one. The present predictive method is compared with that of other authors.     

Self-cooling effect on the kinetics of nonisothermal dehydration of lithium sulfate monohydrate

The effects of self cooling on the apparent kinetics of the nonisothermal dehydration of crushed crystals of lithium sulfate monohydrate were investigated using TG accompanied by DTA and power-compensation type DSC. Linearity of the sample heating rate on the TG-DSC system is much better than that on the TG-DTA. Kinetic obedience and Arrhenius parameters obtained from the TG-DTA deviate considerably from those obtained from the TG-DSC; the latter are the more accurate due to the better linearity of the sample heating rate.

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Zusammenfassung Mittels TG, ergänzt durch DTA und DSC mit Leistungskompensation wurde der Einfluß des Self-cooling-Effektes auf die scheinbare Kinetik der nichtisothermen Dehydratation von zerkleinerten Kristallen aus Lithiumsulfat-Monohydrat geschätzt. Die mittels TG-DTA erhaltene Kinetik und die Arrheniusschen Parameter weichen erheblich von denen ab, die mittels TG-DSC ermittelt wurden. DSC mit Leistungskompensation und TG-DSC haben gegenüber TG oder TG-DTA den großen Vorteil, das nichtisotherme kinetische Verhalten von Feststoffzersetzungen zu charakterisieren. Mittels Thermoanalyse nichtisotherm ermittelte kinetische Parameter sind ohne Anwendung von DSC eher unreell, besonders wenn sie bei größeren Aufheizgeschwindigkeiten und Probengrößen bestimmt wurden.

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We thank Dr. A. K. Galwey for reading the text and for valuable comments.     

Vacancy ion-exclusion chromatography of carboxylic acids on a weakly acidic cation-exchange resin

In this preliminary study, a new approach to ion-exclusion chromatography is proposed to overcome the relatively poor conductivity detection response which occurs in ion-exclusion chromatography when acids are added to the eluent in order to improve peak shape. This approach, termed vacancy ion-exclusion chromatography, requires the sample to be used as eluent and a sample of water to be injected onto a weakly acidic cation-exchange column (TSKgel OApak-A). Vacancy peaks for each of the analytes appear at the retention times of these analytes. Highly sensitive conductivity detection is possible and sharp, well-shaped peaks are produced, leading to efficient separations. Retention times were found to be affected by the concentration of the analytes in the eluent, and also by the presence of an organic modifier such as methanol in the eluent. Detection limits for oxalic, formic, acetic, propionic, butyric and valeric acids were 0.1, 0.2, 0.3, 0.3, 0.4 and 0.5 microM, respectively, and linear ranges for some acids extended over two orders of magnitude. Precision values for retention times were 0.21% and for peak areas were <1.90%. The vacancy ion-exclusion chromatography method was found to give detection responses four to 10 times higher than conventional ion-exclusion chromatography using sulfuric acid eluent and two to five times higher than conventional ion-exclusion chromatography using benzoic acid eluent.     

Photoassisted NO reduction with NH3 over TiO2 photocatalyst

Photoassisted selective catalytic reduction of NO with ammonia (photo-SCR) at low temperature over irradiated TiO2 in a flow reactor was confirmed to proceed efficiently and the adsorbed ammonia reacted with NO under irradiation of TiO2.     

CpRuIIPF6/quinaldic acid-catalyzed chemoselective allyl ether cleavage. A simple and practical method for hydroxyl deprotection

A cationic CpRu(II) complex in combination with quinaldic acid shows high reactivity and chemoselectivity for the catalytic deprotection of hydroxyl groups protected as allyl ethers. The catalyst operates in alcoholic solvents without the need for any additional nucleophiles, satisfying the practical requirements of operational simplicity, safety, and environmental friendliness. The wide applicability of this deprotection strategy to a variety of multifunctional molecules, including peptides and nucleosides, may provide new opportunities in protective group chemistry. [structure: see text]     

Preparation of a novel molecularly imprinted polymer using a water-soluble crosslinking agent

A molecularly imprinted polymer was prepared using a water-soluble crosslinking agent. An ionic complex was utilized as the assembly for the template molecule and the functional monomer, and water as porogenic solvent during preparation of the imprinted polymer. The results of chromatographic evaluations for the prepared polymer suggested that the polymer had much lower hydrophobicity compared with usual octadecyl group bonded silica or the usual molecular imprinted polymer prepared from ethyleneglycol dimethacrylate, and the selective recognition ability for template molecule in the completely aqueous condition.     

Ruthenium-catalyzed formation of aryl(diphenyl)phosphine oxides by reactions of propargylic alcohols with diphenylphosphine oxide

1,1-Diaryl-1-penten-4-yn-3-ols react with diphenylphosphine oxide in the presence of a thiolate-bridged diruthenium complex as a catalyst and give high yields of aryl(diphenyl)phosphine oxide products via an initial substitution followed by a cyclization at the produced allene intermediate. [reaction: see text]     

Novel Host Compounds, 1,1′-Binaphthyl-2,2′-Dihydroxy-5,5′- and 6,6′-Dicarboxylic Acid, which Trap Guest Molecules Tightly in their Inclusion Crystals

The host compounds 1,1’-binaphthyl-2,2′-dihydroxy-5,5′-dicarboxylic acid (1) and 1,1′-binaphthyl-2,2′-dihydroxy-6,6′-dicarboxylic acid (2) have been synthesized, and their inclusion properties have been studied. Inclusion complexes formed by 1 and 2 with volatile guests such as acetone and methanol release the guests only at much higher temperatures than their boiling points. The crystal structures of the inclusion complexes have been determined from single crystal X-ray diffraction data and show different host lattices.     

Instantaneous strain recovery elasticity and endothermic heat change in nylon-6 monofilaments and silicone rubbers

The instantaneous elastic moduli for a nylon-6 monofilament were derived on strain recoveries right after creep, stress relaxation, and rapid elongation,E _c ,E _s andE _e , respectively. It was found that during strain recoveryE _s (>E _e ) andE _e increase monotonically with increasing load,m ₁, on the sample. The extrapolated value of E_s atm ₁=0 g is almost equal to Young's modulus, 4.06 GPa. The value ofE _c also increased with increasingm ₁, and atm ₁=600 g (1.93 t cm^–2) reached about 14 GPa. The endothermic heat change right after creep, stress relaxation or rapid elongation,Q, was negligibly small. For comparison,E _s ,E _c andQ were also investigated for silicone rubber. It was found thatE _s (53.8 M Pa at the draw ratioD=1.2) decreased abruptly atD=1.3. In the range ofD=1.4–1.9,E _s was only 22.6 MPa. In the case of stress relaxation,Q increased with increasingD from 4 J mol^–1 (atD=1.2) to 56 J mol^–1 (atD=1.9). FurthermoreE _c (5.58 MPa atm ₁=133.8 g (429.4 kg cm^–2)) increased gradually with increasing m₁ and attained 16.6 MPa atm ₁=548.4 g (1.76 t cm^–2). In the case of creep,Q was in the range of 0–11.5 J mol^–1 and larger when larger loads,m ₂ were removed during the later stages of creep.Dedicated to Professor Bernhard Wunderlich on the occasion of his 65th birthdayThe author wishes to thank Mr. Keizi Igarashi and Mr. Tetsuya Yasui for helping in the experiments.     

Clinical evaluation of immunoglobulin-E radioimmunoassay kit

An IgE RIA kit (Sandwich method; Dainabott), is used to obtain the following results. (1) Standard curve: Since the range of reproduction rate show 3.16-7.07% (C.V.), the curve become steep. (2) Incubations under controlled situation: Both of the incubations are controlled at 15-30 degrees C for 2 h. (3) Reproducibility test: Coefficients of variation (C.V.) of intra-assay and inter-assay variation are 2.32-3.94% and 2.92-3.92% respectively. (4) Recovery test: A result of the recovery test range between 100.1-101.7%. (5) Dilution test: Multiple dilution effects are observed. (6) Average counts of the serum IgE for the controlled and diseased groups: The average counts of the serum IgE for the controlled group, atopic diseased group, allergic rhinitis group and allergic bronchial asthma are 144.9 +/- 183.2 IU/ml, 1,099.0 +/- 2,782.4 IU/ml, 1,150.9 +/- 2,063.3 IU/ml and 600.7 +/- 686.4 IU/ml respectively. The value of the diseased groups have tendency to show higher averages than the controlled group. Since the controlled and diseased groups show wide distributions of the serum IgE level, there is no significant difference of two variations. However the diseased groups have tendency to show higher ratio of the serum IgE level in blood than the controlled groups. These basic researches are quite meaningful, because they are able to apply for a supplemental diagnosis of the atopic and parasitic disease.