Electronic detection of single-base mismatches in DNA with ferrocene-modified probes.

Genotyping and gene-expression monitoring is critical to the study of the association between genetics and drug response (pharmacogenomics) and the association of sequence variation with heritable phenotypes. Recently, we developed an entirely electronic method for the detection of DNA hybridization events by the site-specific incorporation of ferrocenyl derivatives into DNA oligonucleotides. To perform rapid and accurate point mutation detection employing this methodology, two types of metal-containing signaling probes with varying redox potentials are required. In this report we describe a new ferrocene-containing phosphoramidite 9 that provides a range of detectable redox potentials. Using automated DNA/RNA synthesis techniques the two ferrocenyl complexes were inserted at various positions along oligonucleotide probes. Thermal stability analysis of these metal-containing DNA oligonucleotides indicates that incorporation of 9 resulted in no destabilization of the duplex. A mixture of oligonucleotides containing compounds 9 and I was analyzed by alternating current voltammetry (ACV) monitored at the 1st harmonic. The data demonstrate that the two ferrocenyl oligonucleotide derivatives can be distinguished electrochemically. A CMS-DNA array was prepared on an array of gold electrodes on a printed circuit board substrate with a self-assembled mixed monolayer, coupled to an electronic detection system. Experiments for the detection of a single-base match utilizing two signaling probes were carried out. The results demonstrate that rapid and accurate detection of a single-base mismatch can be achieved by using these dual-signaling probes on CMS-DNA chips.     

Aggregation behavior of block polyethers with branched structure at air/water surface

The block polyethers with various branch structure, such as TEPA[(PO)₃₆(EO)₁₀₀]₇, TEPA[(PO)₃₆(EO)₁₀₀(PO)₃₆]₇, and TEPA[(PO)₃₆(EO)₁₀₀(PO)₅₆]₇ were synthesized. Moreover, the aggregation behavior was investigated via the measurements of equilibrium surface tension, dynamic surface tension, and surface dilational viscoelasticity, in order to probe the effect of the block structure on the property of the branched block polyethers. The surface tension results show that the efficiency and effectiveness of the block polyethers to lower surface tension increase with the increase of the PO group numbers. The maximum surface excess concentration (Γ_max) values and the minimum occupied area per molecule at the air/water interface (A_min) values of the branched block polyethers obtained from Gibbs adsorption equations increase and decrease with the increases of the PO group numbers, respectively. The dynamic parameters n and t^* representing the diffusion speed of the polyether molecules from bulky solution to the subsurface and from the subsurface to the air/water surface are obtained according to the equation proposed by Rosen. The results show that the n values firstly increase and then decrease and t^* values decrease with the increase of the polyether concentrations. The results of surface dilational viscoelasticity show that the dilational modulus of TEPA[(PO)₃₆(EO)₁₀₀(PO)₅₆]₇ is the largest among the three block copolymers at the low concentration (<1 mg L⁻¹) but that of TEPA[(PO)₃₆(EO)₁₀₀]₇ is the largest at the high concentration (>1 mg L⁻¹).     

Dynamical behaviors of the brusselator system with impulsive input

Responses of dynamic system to pulse perturbations were investigated theoretically and experimentally. The model used in this paper has been proved dissipative by impulsive and dynamic theory. Complex phenomena such as limit cycles, periodic solutions, and chaos were numerically demonstrated.     

Some topological properties of folded Petersen graph

The k-dimensional folded Petersen graph, FP_k, is an iterative Cartesian product on the simple Petersen graph. As an essential component of folded Petersen cube, folded Petersen graph has many important properties. In this paper, we prove that the 3k-wide diameter and 3k-fault diameter of k-dimensional folded Petersen graph is either 2k+1 or 2k+2. Furthermore, we show that FP_k is interval monotone.     

Water-dispersible hydroxyapatite nanorods synthesized by a facile method

A simple and effective method, using calcium nitrate and triammonium phosphate as starting materials, for the preparation of water-dispersible hydroxyapatite nanorods (HAp) was reported. The process primarily involves the preparation of HAp with the addition of sodium citrate (NaC) and the exchange of absorbed ions (NaC) with sodium hexame taphosphate (NaP). The end products were investigated using various means in order to confirm the particles’ crystal phase and morphology and to understand how to improve their stability. The results demonstrate that the resulting HAp at 90 °C is rod-like with length of 300-400 nm and width of 40-60 nm. The zeta potential values of pure HAp, HAp-NaC, HAp-NaC/NaP are from −15.20, −30.89 to −44.84 mV. The settling time test shows the HAp-NaC/NaP could keep stable above 7 months without any creaming or visible sedimentation. The amount of NaC and the reaction temperature play significant roles in the whole process due to the formation of Ca containing precipitates.