Physicochemical Nature of Perfluoroalkyl Compounds Induced by Fluorine

Perfluoroalkyl (R_f) compounds have unique characters represented by a significantly high hydrophobic property, which often makes us consider that R_f groups should be interacted with each other via the ‘hydrophobic interaction’ as found for a normal hydrocarbon. Due to a similar intuitive and simplistic speculation, the R_f‐specific material properties have long been enveloped in darkness for comprehensive understanding, which should lucidly be discussed within a framework of physical chemistry. Here, we show studies on the stratified dipole arrays (SDA) theory, which readily explains the R_f‐specific material characters in a comprehensive manner based on only a few fundamental physical parameters of fluorine. The SDA theory encompasses some conventional theories that account for only a part of material properties. In addition, we show that the concept of vibrational spectroscopy of R_f compounds should also be revised, since the mass of fluorine is larger than that of carbon, which is opposite to the hydrocarbon case. In this manner, chemistry of R_f compounds needs another fully revised concept, which cannot be replaced by an extended concept of normal hydrocarbon compounds.     

Formation of ternary ion associates using diprotic acid dyes and its application to determination of cationic surfactants

A sensitive and selective method is described for the determination of cationic surfactants, such as benzethonium, benzalkonium, cetylpyridinium and trimethylstearylammonium, based on the formation and extraction of ternary ion associates with an acid dye (bromophenol blue or bromochlorophenol blue) and quinidine. Quinidine reacts with divalent anionic dyestuffs to form a bulky 11 complex anion, which is extractable into 1,2-dichloroethane as ternary ion associates with cationic surfactants in nearly neutral media. The ternary ion associate gives a blue product. Linearity of the calibration curve is improved and the extractability of the cationic surfactants is enhanced in the presence of quinidine. In addition, many other amines do not interfere with the determination. The blue ion associates can be used for the selective and sensitive spectrophotometric determination of cationic surfactants.     

Enhanced effect of RM-β-cyclodextrin on biodegradation of toluene in wastewater by activated sludge

Recently, air and ground water pollution and contamination of soil by toluene have been drawing increasing attention and became an urgently important problem in environmental pollution. Hence, the development of highly sophisticated removal techniques of toluene is required for the global environmental preservation. Since toluene is a highly volatile material, it is difficult to treat it by usual activated sludge water treatment. In this study, in order to prevent volatilization of toluene, randomly methylated β-cyclodextrin (RM-β-CD) was used to complex with toluene and by reason of that, facilitates the biodegradation of toluene by activated sludge. The enhanced effect of RM-β-CD for the biodegradation of toluene by activated sludge was studied in batch systems. The addition of RM-β-CD dominantly promoted proliferation of activated sludge. This implied that the addition of RM-β-CD prevented toluene from evaporating during treatment, and as a result, toluene was effectively decomposed by the activated sludge.     

Parallelized integral-direct CIS(D) calculations with multilayer fragment molecular orbital scheme

We have developed a parallelized integral-direct code of the perturbative doubles correction for configuration interaction with singles, proposed as CIS(D) by Head-Gordon et al. (Chem Phys Lett 219:21, 1994). The CIS(D) method provides the energy corrections both of the relaxation and differential correlation for the respective CIS excited states. The implementation of CIS(D) is based on our original algorithm for the second-order Møller–Plesset perturbation (MP2) calculations (Mochizuki et al. in Theor Chem Acc 112:442, 2004). There is no need to communicate bulky intermediate data among worker processes of the parallelized execution. This CIS(D) code is then incorporated into a developer version of ABINIT-MP program, in order to improve the overestimation in excitation energies calculated by the CIS method in conjunction with the multilayer fragment molecular orbital scheme (MLFMO-CIS) (Mochizuki et al. in Chem Phys Lett 406:283, 2005). The MLFMO-CIS(D) method is first used in evaluating the lowest n\(\pi^{*}\) excitation energy of the hydrated formaldehyde. The photoactive yellow protein (PYP) is the second target of MLFMO-CIS(D) calculation. Through these applications, it is shown that the CIS(D) correction improves the CIS results favorably.     

Tetrakis(4-pyridyl)methane: synthesis, properties, and a diamondoid network structure of its silver(I) complex

The title compound, which has the highest symmetry among tetrapyridylmethane isomers, has been synthesized from tris(4-pyridyl)methane and 4-chloropyridine. The silver(I) complex of the title compound forms a three-dimensional, non-interpenetrated diamondoid network in a crystal.     

N-Methyl substituted 2',4'- BNANC: a highly nuclease-resistant nucleic acid analogue with high-affinity RNA selective hybridization

Oligonucleotides modified with a novel BNA analogue, 2', 4'-BNA(NC)[N-Me], were synthesized, and in comparison to 2',4'-BNA (LNA), have similarly high RNA affinity, better RNA selectivity and much higher resistance to nuclease degradation, suggesting that the novel BNA analogue may be particularly useful for antisense approaches.     

Electrolyte-induced mesoscopic aggregation of thiacarbocyanine dye in aqueous solution: counterion size specificity

Countercation size specificity is presented for the electrolyte-induced aggregation of 3,3'-disulfopropyl-5,5'-dichloro-9-methyl thiacarbocyanine (TCC) dye in aqueous solution. Addition of electrolytes having a small monovalent cation (Na+, NH4+, or Cs+) induced pure H aggregates of TCC, whereas J aggregates were preferentially promoted by electrolytes with a large monovalent cation ([N(CH3)4]+ or [N(C2H5)4]+). The electrolyte-induced H aggregate (HS aggregate) differed spectroscopically from that spontaneously self-assembled in aqueous solution. Mesoscopic structure of the HS aggregates was revealed via polarized-light microscopy and atomic force microscopy; a rodlike morphology of 50-70 nm wide and tens to hundreds of micrometers long with very strong negative birefringence. A simple structural model based on semiempirical molecular orbital calculations can explain the aggregation behaviors: The anionic TCC monomer shows a considerable planar geometry between two benzothiazole end groups when it involves a sodium cation, which favors the H-type molecular arrangements in a face-to-face orientation. On the other hand, the TCC dye has a twisted conformation when it implicates a large tetramethylammonium cation, resulting in the formation of the J aggregates.     

Two-dimensional hopping motion of encapsulated La atoms in silylated La(2)@C(80)

The (139)La NMR study of the exohedrally functionalized derivatives of La(2)@C(80) metallofullerene, La(2)@C(80)(Ar(2)Si)(2)CH(2) (: Ar = Mes, Mes = mesityl, : Ar = Dep, Dep = 2,6-diethylphenyl), reveal that the two La atoms hop between two sites along the equator of the C(80) cage.