A Gaseous Nitric Acid Analyzer for the Remote Atmosphere Based on the Scrubber Difference/NO-Ozone Chemiluminescence Method

An in situ nitric acid analyzer has been designed for sensing in the remote atmosphere. Its operation is based on measuring the concentration difference between the total odd nitrogen species (NO(y)) and HNO(3)-scrubbed NO(y). NO(y) was measured by an NO-ozone chemiluminescent detector equipped with a molybdenum converter. A temperature-controlled annular denuder coated with NaCl was used as a scrubber of gaseous HNO(3). The current detection limit of the HNO(3) analyzer was estimated to be 158 and 71 pptv (parts per trillion by volume) with an integration time of 2 and 10 min (2sigma), respectively. The analyzer was calibrated using standard gaseous HNO(3) to verify its performance. The HNO(3) concentrations measured by the scrubber difference and the NO-ozone chemiluminescence methods (SDCL method) were in agreement with those obtained by the denuder method within the experimental uncertainties (more than +/-4%). We conducted limited field observations of NO(y) and HNO(3) in the remote atmosphere using the newly designed SDCL method at Cape Hedo, Okinawa, Japan.     

Hexa‐ and Octagold Chains from Flexible Tetragold Molecular Units Supported by Linear Tetraphosphine Ligands

A flexible building block : Flexible tetragold(I) chain complexes supported by a new single methylene‐bridged tetraphosphine ligand were synthesized and further transformed into discrete linear octagold(I) {Au₈} and cyclic hexagold(I) {Au₆} structures by reaction with KI and NaAuCl₄, respectively (see picture, Au purple, Cl dark green, PF₆ light green, I pink). The tetragold complexes are also luminescent at room temperature.

     

An optimum strategy for solution chemistry using semiempirical molecular orbital method: Importance of description of charge distribution

For the purpose to execute direct dynamics calculation in solution chemistry, we propose an optimum strategy for solution chemistry using semiempirical molecular orbital (MO) method with neglect of diatomic differential overlap (NDDO) approximation with specific solution reaction parameters (SSRP), i.e., the NDDO‐SSRP method. In this strategy, the empirical parameters of the semi‐empirical MO method were optimized individually for target molecule or ion by reference to the ab initio MO calculation data for many configurations on the potential energy surface near the reaction path. For demonstration, the NDDO‐SSRP method was applied to two molecules and two ions (OH^?, H₂O, NH₃, NH₄⁺) at their equilibrium states in aqueous solution, respectively. Accordingly, it was verified that both the potential energy surface and the charge distribution of these solutes in aqueous solution are dramatically improved to reproduce themselves accurately at ab initio MO calculation level. In conclusion, it is expected that the NDDO‐SSRP method should become quite useful for dynamic and statistical applications to chemical reaction systems in solution. © 2009 Wiley Periodicals, Inc. J Comput Chem, 2010     

Pd-catalyzed 5-endo-trig-type cyclization of β,γ-unsaturated carbonyl compounds: an efficient ring closing reaction to give γ-butenolides and 3-pyrrolin-2-ones

The 5-endo-trig-type cyclization has been performed using a Pd-bis(isoxazoline) catalyst. The present cyclization of β,γ-unsaturated carbonyl compounds gave γ-butenolides and 3-pyrrolin-2-ones in good to excellent yields.     

Ferrocenylnaphthalene diimide-based electrochemical detection of methylated gene

Ferrocenylnaphthalene diimide (FND)-based electrochemical hybridization assay was applied to the detection of methylated cytosine of DNA using the products obtained after treatment with bisulfite followed by polymerase chain reaction (PCR), where unmethylated cytosine is converted to thymine and methylated one to cytosine. Twenty-meric DNA probes for the methylated (cytosine) and unmethylated (thymine) types of the part of the promoter region of cyclin D-dependent protein kinase inhibitor, p16, gene (p16^Ink4a) were used to be immobilized on the electrochemical array (ECA) chip. Using 1 μL of 10 ng/μL of methylated sample obtained from the methylation-specific PCR of methylated genome containing 10-times excess of unmethylated one, the methylated PCR sample could be detected by the identical electrochemical signals from the two DNA probes under the settled optimum hybridization conditions.     

Tetrakis-acridinyl peptide: distance dependence of photoinduced electron transfer in deoxyribonucleic acid assemblies

A simple determination method for halogens (Cl, Br, and I) in plant samples using inductively coupled plasma-mass spectrometry (ICP-MS) was developed. In order to extract these halogens into aqueous solution, a leaching step with tetramethyl ammonium hydroxide (TMAH) under mild conditions was carried out, i.e. a 0.1-g dried sample was left overnight (ca. 12 h) in contact with 1 mL of 25% TMAH in a small PFA vial at 60 °C. Then the sample was transferred to a 50-mL centrifuge tube and diluted to 50 mL with deionised water. After centrifugation, halogens in the supernatant were determined by ICP-MS. When standard reference materials were measured by the method, the data were within the 95% confidence range of the certified values. The results also agreed well with the values obtained by neutron activation analysis with correlation factor r > 0.99.     

Determination of unique amino acid substitutions in protein variants by peptide mass mapping with FT-ICR MS

Peptide mass mapping plays a central role in the structural characterization of protein variants with single amino acid substitutions. Among the 20 standard amino acids found in living organisms, 18, all but Leu and Ile, differ from each other in molecular mass. The mass differences between amino acids range from 0.0364 to 129.0578 Da. The mass of the mutated peptide or the difference between normal and mutated peptides uniquely determines the type of substitution in some cases, and even pinpoints the position of the mutation when the involved residue is found only once in the peptide. Among 75 pairs of amino acid residues that are exchangeable via a single nucleotide replacement, 53 show specific change in exact mass, while only 25 in nominal mass. On the other hand, precise measurement, at least to the third decimal place, greatly enhances the capacity of the peptide mass mapping strategy for structural characterization. This notion was verified by an analysis of three Hb variants using MALDI-FTICR MS. In addition, the baseline resolution of two 1 kDa peptides with a single amino acid difference, Lys or Gln, which have the smallest (0.0364 Da) difference among residues, was achieved by measurement at a mass resolving power of 342,000. The results indicated that the smallest difference, 0.0040 Da between [Delta29.9742 for Glu-Val] and [Delta29.9782 for Trp-Arg], among all types of amino acid substitutions derived from a single nucleotide replacement can be discriminated at the present performance level. Therefore, FTICR MS is capable of identifying all 53 types of substitutions, each of which is associated with a unique mass difference, except for the Leu and Ile isomers.     

Resonance Raman spectroscopic investigation of structural changes of CO‐heme in soluble guanylate cyclase generated by effectors and substrate

The influence of the effectors YC‐1 and BAY on the CO‐heme structure of bovine lung soluble guanylate cyclase (sGC) was investigated with resonance Raman spectroscopy. The effectors produced a five‐coordinate (5c) CO‐heme in addition to the His‐bound six‐coordinate (6c) CO‐heme, and both their Soret maxima were determined by simulation. On the basis of the absorption intensity, the amount of the 5c species was not dominant, in contrast to the high activity. The heme structural features common to the 5c and 6c CO‐hemes generated by effectors are that the vinyl and propionate side chains are more coplanar to the pyrrole rings. The out‐of‐plane Raman bands were observed only for the 5c species, for which the saddling and propeller distortions of heme were deduced to be large. The Fe CO stretching bands of the 5c species at 522 cm⁻¹ and of the 6c species at 488 cm⁻¹ were most enhanced upon excitation at 407 and 422 nm, respectively, which is consistent with the simulated spectra. Unexpectedly, the ¹³C¹⁸O isotope sensitivity appeared in low wavenumber porphyrin modes. From these observations, we propose that the high catalytic activity of sGC‐CO in the presence of effectors is a result of the concerted effects of protein conformational changes triggered by certain local interactions between the heme side chains and effectors/substrate in the heme pocket, which partly induce the cleavage of the Fe Hisβ 105 bond. Copyright © 2010 John Wiley & Sons, Ltd.     

Test method for the presence or absence of Pb in electrical components using energy-dispersive micro X-ray fluorescence.

The micro-EDXRF (energy dispersive X-ray fluorescence) method was applied to the screening of Pb in micrometer-area samples, such as a Cu contact in electrical components that had been coated by Pb-free Sn-Ag-Cu solder. The reliability of the screening method was evaluated by a comparison with a scanning electron microscope (SEM) observation and a precious chemical analysis method of inductively coupled plasma mass spectrometry (ICP-MS). Some factors that affect the testing reliability, such as the thickness of the solder, the segregation of Pb and Ag, etc. were found by SEM observations. By adjusting some calculation parameters, screening of the micrometer area (0.1 mm) was performed using the fundamental parameter (FP) method for a thin film in conjunction with micro-EDXRF. The measurement error ranged by 25% for the thin film-FP method. The resulted detection limit was 0.04 wt% for Pb, depending on the solder thickness. This method can be successively applied for quality control to check the purity of a Pb-free Sn-Ag-Cu solder coating in electrical components.     

Mechanism of the NO2 conversion to NO2- in an alkaline solution.

The reaction of NO2 and NaOH aqueous solution at room temperature was studied for elucidating the behavior of gaseous NO2 in an alkaline solution. Experimental runs related to NO2 absorption have been carried out in various pH solutions. The nitrite and nitrate ions formed in these absorption solutions were quantitatively analyzed. In the case of pH 5-12, both of the nitrite and nitrate ions were formed simultaneously. On the other hand, only the nitrite ion was formed when the pH of the absorption solution was higher than 13. In this paper, a new reaction mechanism was proposed to explain the selective formation of nitrite ion in the 10 M alkaline solution. In order to confirm the new reaction mechanism, H2(18)O was used as part of the absorption solution for detecting oxygen gas production. The amounts of reaction products: (18)O(18)O, (18)O(16)O and (16)O(16)O, were quantitatively determined. It was confirmed that the new reaction proceeds mainly in the 10 M alkaline solution.