Total synthesis of cis-solamin and its inhibitory action with bovine heart mitochondrial complex I

A convergent total synthesis of cis-solamin (1a) and its diastereomer (1b) was accomplished. A key reaction of this approach was the use of VO(acac)₂-catalyzed diastereoselective epoxidation of (Z)-bis-homoallylic alcohol 3 followed by spontaneous cyclization for the cis-THF ring formation. By comparison of the optical rotation of the two possible diastereomers, it is suggested that the absolute configuration of natural cis-solamin is 1a. Inhibitory action of synthetic 1a and 1b with bovine heart mitochondrial complex I are reported.     

Selective capture of 1α,25-(OH)2-previtamin D3 utilizing polymer-supported trialkylsilyl triflate in the synthesis of 1α,25-(OH)2-vitamin D3

Catch and release method utilizing polymer-support was investigated in the separation of 1α,25-(OH)₂ pre- and provitamin D₃. Polymer-supported alkyldiisopropylsilyl triflate selectively captured the previtamin D₃ from a 26:74 mixture of pre- and provitamin D₃ produced by photoisomerization of provitamin D₃.     

A total synthesis of spiruchostatin A

We achieved the total synthesis of the histone deacetylase inhibitor spiruchostatin A, as the prelude to the preparation of a combinatorial library of its analogues. Two key reactions were an asymmetric acetate aldol reaction using a Zr-enolate and macrolactonization using the Shiina method.     

Hydration profiles of aromatic amino acids: conformations and vibrations of L-phenylalanine-(H2O)n clusters

IR-UV double resonance spectroscopy and ab initio calculations were employed to investigate the structures and vibrations of the aromatic amino acid, L-phenylalanine-(H(2)O)(n) clusters formed in a supersonic free jet. Our results indicate that up to three water molecules are preferentially bound to both the carbonyl oxygen and the carboxyl hydrogen of L-phenylalanine (L-Phe) in a bridged hydrogen-bonded conformation. As the number of water molecules is increased, the bridge becomes longer. Two isomers are found for L-Phe-(H(2)O)(1), and both of them form a cyclic hydrogen-bond between the carboxyl group and the water molecule. In L-Phe-(H(2)O)(2), only one isomer was identified, in which two water molecules form extended cyclic hydrogen bonds with the carboxyl group. In the calculated structure of L-Phe-(H(2)O)(3) the bridge of water molecules becomes larger and exhibits an extended hydrogen-bond to the pi-system. Finally, in isolated L-Phe, the D conformer was found to be the most stable conformer by the experiment and by the ab initio calculation.     

Optical rotation inversion of porphyrin-DNA complexes

A porphyrin-DNA complex in which helical porphyrin assemblies were stacked as π-stacked aggregates on a DNA scaffold was found. The complex indicates the inversions of optical rotation by only the control of ionic equilibrium without any structural changes of DNA scaffold.     

Visualization of large-scale aqueous solubility data using a novel hierarchical data visualization technique

It is a difficult task to recognize the trends in molecular physical properties relevant to a specific chemical class and find a way to optimize potential compounds. We present here a novel hierarchical data visualization technique, named "HeiankyoView", to visualize large-scale multidimensional chemical information. HeiankyoView represents hierarchically organized data objects by mapping leaf nodes as colored square icons and nonleaf nodes as rectangular borders. In this way, data objects can be expressed as equishaped icons without overlapping one another in the two-dimensional display space. HeiankyoView has been applied to visualize aqueous solubility data for 908 compounds collected from the published literature. When the results of a recursive partitioning analysis and hierarchical clustering analysis were visualized, the trends hidden in the solubility data could be effectively displayed as intuitively understandable visual images. Most interestingly, the data visualization technique, without any statistical computations, was able to assist us in extracting from such large-scale data meaningful information establishing that ClogP and the molecular weight are critical factors in determining aqueous solubility. Thus, HeiankyoView is a powerful tool to help us understand structure-activity relationships intuitively from a large-scale data set.     

Synthesis and Polymerization of (S)-4-Methyl-2-N,N-dimethylaminopentyl Methacrylate

(S)-4-Methyl-2-N,N-dimethylaminopentyl methacrylate (DMAPM) was synthesized from the reaction of N,N-dimethyl-L-leucinol with methacryl chloride, and its radical polymerization was investigated. It was found that DMAPM readily polymerized by α,α¹-azobisisobutyronitrile (AIBN) as an initiator to give poly-DMAPM. The copolymerization of DMAPM(M₁) with styrene(Mz) was also studied in various solvents with AIBN as an initiator at 60°C. From the result obtained in benzene, Q and e values of DMAPM were determined to be 0.64 and -0.04, respectively. Specific rotations of the copolymers of DMAPM with styrene were not proportional to the weight percent of the DMAPM unit incorporated, but the observed relation gave a downward curve. The copolymerizations DMAPM with α, β-disubstituted monomers such as maleic acid, maleimide, and N-phenylmaleimide were carried out in order to induce asymmetric center in the polymer chain. After hydrolysis of the copolymers obtained, the hydrolyzed polymers were found to be optically active, suggesting an induction of asymmetric center into the polymer chain.     

Sulfur-Containing Vinyl Monomers. XV. Kinetic Study of Radical Polymerization of Vinyl Mercaptobenzothiazole and Its Copolymerization

A kinetic study of radical polymerization of vinyl mercaptobenzothiazole (VMBT) with α,α′-azobisisobutyonitrile (AIBN) at 60°C was carried out. The rate of polymerization (R_p) was found to be expressed by the rate equation: R_p = k[AIBN]^0.5 [VMBT]^1.0, indicating that the polymerization of this monomer proceeds via an ordinary radical mechanism. The apparent activation energy for overall polymerization was calculated to be 20.9 kcal/mole. Moreover, this monomer was copolymerized with methyl methacrylate, acrylonitrile, vinyl acetate, phenyl vinyl sulfide, maleic anhydride, and fumaronitrile at 60°C. From the results obtained, the copolymerization parameters were determined and discussed.     

Kinetic Study of 1-β-Cyanoethyl Aziridine for Ring-Opening Polymerization Initiated with Alkyl Sulfate

The kinetics of the cationic polymerization of 1-β-cyanoethyl aziridine initiated 3-hydroxy- 1-propane sulfonic acid sultone and methyl tosylate have been studied. The course of polymerization involved the propagation stage and termination reaction due to the reaction between the growing chain and imino groups in the polymer chain. The propagation constants and termination constants were obtained. The enthalpies of activation for the propagation and termination reactions are ΔH_p? = 12.9 kcal/mol and ΔH_t? = 12.4 kcal/mol, and the entropies of activation are ΔS_p? = -31 cal/deg·mol and ΔS_t? = -39 cal/deg·mol. Otherwise, the polymerization initiated with methyl tosylate involved an early stage which was initiated very quickly.