pd Scattering Using a Rigorous Coulomb Treatment

Reliability of the screened Coulomb renormalization method, which was proposed in an elegant way by Alt?CSandhas?CZankel?CZiegelmann (ASZZ), is discussed on the basis of ??two-potential theory?? for the three-body AGS equations with the Coulomb potential. In order to obtain ASZZ??s formula, we define the on-shell M?ller function, and calculate it by using the Haeringen criterion, i.e. ??the half-shell Coulomb amplitude is zero??. By these two steps, we can finally obtain the ASZZ formula for a small Coulomb phase shift. Furthermore, the reliability of the Haeringen criterion is thoroughly checked by a numerically rigorous calculation for the Coulomb LS-type equation. We find that the Haeringen criterion can be satisfied only in the higher energy region. We conclude that the ASZZ method can be verified in the case that the on-shell approximation to the M?ller function is reasonable, and the Haeringen criterion is reliable.     

Integration of microfabricated needle-type glucose sensor devices with a novel thin-film Ag/AgCl electrode and plasma-polymerized thin film: mass production techniques

We developed an integrated array of needle-type biosensors employing a novel process of fabrication, comprising conventional semiconductor fabrication and micromachining technology. Amperometric sensing electrodes with plasma-polymerized films and a thin-film Ag/AgCl reference electrode were directly integrated on a glass substrate with thin-film process, e.g., sputtering. An enzyme was immobilized on the electrode via the plasma-polymerized film, which was deposited directly on the substrate using a dry process. The novel thin-film Ag/AgCl reference electrode showed stable potentials in concentrated chloride solutions for a long period. The plasma-polymerized film is considered to play an important role as an interfacial design between the sensing electrode and the immobilized enzyme considering that the film is extremely thin, adheres well to the substrate (electrode) and has a highly cross-linked network structure and functional groups, such as amino groups. The results showed increments of the sensor signal, probably because the plasma-polymerized film allowed a large amount of enzyme to be immobilized. The greatest advantage is that the process can permit the mass production of high-quality biosensors at a low cost.     

Usefulness of field desorption mass spectrometry in determining molecular masses of carotenoids,natural carotenoid derivatives and their chemical derivatives

Field desorption (FD) mass spectrometry was applied to the determination of the molecular masses of carotenoids, natural carotenoid derivatives and their chemical derivatives. All the carotenoids examined gave the molecular ion as the base peak with negligible fragment ions. Carotenoid glucoside and its fatty acid monoester were successfully determined without acetylation, whereas carotenoic acids (carboxylate and sulphate) needed to be converted into methyl esters prior to analysis. The applicable ranges of molecular masses and polarity were very wide. In addition, carotenoid glycoside gave only [M]⁺˙ without [M + H]⁺˙ and [M + cation]⁺˙. The numbers of carbonyl groups, primary and/or secondary hydroxyl groups and total hydroxyl groups could be directly determined according to the increase in mass units of the carotenoids after chemical reduction, acetylation and trimethylsilylation, respectively. Owing to the negligible fragment ions, FD analysis was also suitable for carotenoids containing small amounts of impurities or other carotenoids. Hence this technique is useful for determining the molecular masses of carotenoids and the number of modifiable groups in carotenoids.     

Studies on a new biosynthetic pathway for menaquinone

Menaquinone is biosynthesized from chorismate via a new pathway involving 1,4-dihydroxy-6-naphthoate in Streptomyces and presumably in pathogenic bacteria Helicobacter and Campylobacter.     

Fluids in nanospaces: molecular simulation studies to find out key mechanisms for engineering

We have analyzed various phenomena that occur in nanopores, focusing on elucidating their key mechanisms, to advance the effective engineering use of nanoporous materials. As ideal experimental systems, molecular simulations can effectively provide information at the molecular level that leads to mechanistic insight. In this short review, several of our recent results are presented. The first topic is the critical point depression of Lennard-Jones fluid in silica slit pores due to finite size effects, studied by our original Monte Carlo (MC) technique. We demonstrate that the first layers of adsorbed molecules in contact with the pore walls act as a “fluid wall” and impose extra finite size effects on the fluid confined in the central portion of the pore. We next present a new kernel for pore size distribution (PSD) analysis, based entirely on molecular simulation, which consists of local isotherms for nitrogen adsorption in carbon slit pores at 77 K. The kernel is obtained by combining grand canonical Monte Carlo (GCMC) method and open pore cell MC method that was developed in the previous study. We show that overall trends of the PSDs of activated carbons calculated with our new kernel and with conventional kernel from non-local density functional theory are nearly the same; however, apparent difference can be seen between them. As the third topic, we apply a free energy analysis method with the aid of GCMC simulations to investigate the gating behavior observed in a porous coordination polymer, and propose a mechanism for the adsorption-induced structural transition based on both the theory of equilibrium and kinetics. Finally, we construct an atomistic silica pore model that mimics MCM-41, which has atomic-level surface roughness, and perform molecular simulations to understand the mechanism of capillary condensation with hysteresis. We calculate the work required for the gas–liquid transition from the simulation data, and show that the adsorption branch with hysteresis for MCM-41 arise from spontaneous capillary condensation from a metastable state.     

Studies of micro-brownian motion of a polymer chain by the fluorescence polarization method. I. Fluorescent conjugates of polyacrylamide

Polyacrylamide having a fluorescent residue at the chain end was prepared by polymerization of acrylamide in the presence of a fluorescent dye. The segmental motion of the chain end in dilute solution was studied by the fluorescence polarization method on the fluorescent polyacrylamide conjugates thus obtained. The linear relation between 1/p and T/η₀ held for every sample studied in aqueous media, where p is the degree of polarization of the fluorescence, T is the absolute temperature, and η₀ is the viscosity of the medium. The mean relaxation time 〈ρ〉 of the conjugate was evaluated from these data as a function of the molecular weight of the conjugate. The value of 〈ρ〉 increased slightly with molecular weight, varying from 3.3 × 10^?9 to 7 × 10^?9 sec. The absolute values of 〈ρ〉 and its molecular weight dependence suggest that 〈ρ〉 represents the mean rotational relaxation time for the cooperative motion of about ten monomeric units at the chain end. The effect of the mean extension of polymer chain on the segmental motion was found to be negligible.     

Molecular vibrations of methane molecules in the structure I clathrate hydrate from ab initio molecular dynamics simulation

Vibrational frequencies of guest molecules in clathrate hydrates reflect the molecular environment and dynamical behavior of molecules. A detailed understanding of the mechanism for the vibrational frequency changes of the guest molecules in the clathrate hydrate cages is still incomplete. In this study, molecular vibrations of methane molecules in a structure I clathrate hydrate are calculated from ab initio molecular dynamics simulation. The vibrational spectra of methane are computed by Fourier transform of autocorrelation functions, which reveal distinct separation of each vibrational mode. Calculated symmetric and asymmetric stretching vibrational frequencies of methane molecules are lower in the large cages than in the small cages (8 and 16 cm(-1) for symmetric and asymmetric stretching, respectively). These changes are closely linked with the C-H bond length. The vibrational frequencies for the bending and rocking vibrational modes nearly overlap in each of the cages.     

Photophysical characterization of natural cis-carotenoids.

By means of steady-state fluorescence spectroscopy we explore the photophysics of two lowest lying singlet excited states in two natural 15-cis-carotenoids, namely phytoene and phytofluene, possessing three and five conjugated double bonds (N), respectively. The results are interpreted in relation to the photophysics of all-transcarotenoids with varying N. The fluorescence of phytofluene is more Stokes-shifted relative to that of phytoene, and is ascribed to the forbidden S1-->S0 transition, with its first excited singlet state (S1) lying 3340 cm-1 below the dipole allowed second excited singlet state (S2), at 77 K. For phytoene the S2 and S1 potential surfaces are closer in energy, probably giving rise to the mixed S2 and S1 fluorescence characteristics. The origin of phytoene fluorescence is discussed and is suggested to be due to the S1-->S0 transition; with the S1 state located 1100 cm-1 below S2 at 77 K. The dependence of the fluorescence quantum yield on temperature and viscosity shows that large amplitude molecular motions are involved in the radiationless relaxation process of phytoene. The transition dipole moment of absorption and emission are parallel in phytoene and nonparallel in phytofluene.