Synthesis of 2′-deoxyguanosine containing a N2-polyamine

The synthesis of benzylated N²-(4,7,10,13-tetraazatridec-1-yl)-2′-deoxyguanosines 4 was accomplished by a key nucleophilic reaction of the novel unsymmetrical polyamine 2 , with 3′,5′-O-(tetraisopropyldisiloxane-1,3-diyl)-2-chloro-2′-deoxyinosine ( 1 ).     

Total synthesis of (+/-)-stemodinone via an efficient ring-exchange strategy

A total synthesis of (+/-)-stemodinone, a tetracyclic stemodane diterpene, from the known tricyclic methyl olefin 11 is described. The key steps involve an efficient ring-exchange reaction and palladium(0)-catalyzed lactone migration. The ring-exchange strategy for controlling the stereochemistry was based on an initial Diels-Alder reaction to form a new ring followed by cleavage of the original ring. Cleavage of the original ring of the Diels-Alder adduct 9 was achieved by an initial regio- and chemoselective Baeyer-Villiger oxidation followed by the Pd(0)-catalyzed lactone-migration reaction reported by us.     

Nitrogen adsorption on fluorinated activated carbon fiber

Nitrogen adsorption isotherms for fluorinated activated carbon fiber (F-ACF) and fluorinated carbon black (F-CB) were measured at 77 K. Surface structures of F-ACF and F-CB were examined by _s -plot analysis using the adsorption data on the nonporous carbon black (CB) and F-CB. The surface energy of F-ACF was lower than that of ACF. The micropore structure of ACF was preserved even after fluorination, although the limiting adsorption amount and the micropore width decreased with fluorination.     

Optimization of a multi-residue screening method for the determination of 85 pesticides in selected food matrices by stir bar sorptive extraction and thermal desorption GC-MS

A multi-residue method to determine 85 pesticides, including organochlorine pesticides, carbamates, organophosphorus pesticides, and pyrethroids, in vegetables, fruit, and green tea, has been developed. The method is based on stir bar sorptive extraction (SBSE) coupled to thermal desorption (TD) and retention time locked (RTL) GC-MS operating in the scan mode. Samples are extracted with methanol and diluted with water prior to SBSE. Dilution of the methanol extract before SBSE was optimized to obtain high sensitivity and to minimize adsorption onto the glass wall of the extraction vessel as well as to minimize sample matrix effects (particularly for the pesticides with high log K(o,w) values). The optimized method consists of a dual SBSE extraction performed simultaneously on respectively a twofold and a fivefold diluted methanol extract. After extraction, the two stir bars are placed in a single glass thermal desorption liner and are simultaneously desorbed. The method showed good linearity (r2 > 0.9900) and high sensitivity (limit of detection: < 5 microg kg(-1)) for most of the target pesticides. The method was applied to the determination of pesticides at low microg kg(-1) in tomato, cucumber, green soybeans, spinach, grapes, and green tea.     

The biphasic virulence activities of gingipains: activation and inactivation of host proteins

Gingipains are trypsin-like cysteine proteinases produced by Porphyromonas gingivalis, a major causative bacterium of adult periodontitis. Rgps (HRgpA and RgpB) and Kgp are specific for -Arg-Xaa- and -Lys-Xaa- peptide bonds, respectively. HRgpA and Kgp are non-covalent complexes containing separate catalytic and adhesion/hemagglutinin domains, while RgpB has only a catalytic domain with a primary structure essentially identical to that of the cata-lytic subunit of HRgpA. The multiple virulence activities of gingipains are reviewed in view of the biphasic mechanisms: activation and inactivation of host proteins. Rgps enhanced vascular permeability through prekallikrein activation or direct bradykinin release in combination with Kgp. This Rgp action is potentially associated with gingival edema and crevicular fluid production. Rgps activate the blood coagulation system, leading to progression of inflammation and consequent alveolar bone loss in the periodontitis site. Rgps also activate protease-activated receptors and induce platelet aggregation, which, together with the coagulation-inducing activity, may explain an emerging link between periodontitis and cardiovascular disease. Kgp is the most potent fibrinogen/fibrin degrading enzyme of the three gingipains in human plasma, being involved in the bleeding tendency at the diseased gingiva. Gingipains stimulate expression of matrix metalloproteinases (MMPs) in fibroblasts and activate secreted latent MMPs that can destroy periodontal tissues. Gingipains degrade cytokines, components of the complement system and several receptors, including macrophage CD14, T cell CD4 and CD8, thus perturbing the host-defense systems and thereby facilitating sustained colonization of P. gingivalis. Gingipains are potent virulence factors of P. gingivalis, and in many regards their pathogenic activities constitute new mechanisms of bacterial virulence.     

Preparation of polysiloxanes from silicic acid. III. Preparation and properties of polysilicic acid butyl esters

Polysilicic acid butyl esters were prepared from 1-butanol and silicic acid extracted from sodium metasilicate solution and water glass with tetrahydrofuran and hydrochloric acid. The properties of the esters were dependent on the degree of esterification (DE). The esters with a DE of less than ca. 60% could be isolated by precipitation with hexane and were highly liable to self-condensation, whereas those with more than 60% DE were soluble in solvents and could not be precipitated easily. They underwent further condensation to form highly polymerized esters. Subsequent silylation allowed the isolation and characterization of these esters. The solvent-soluble silylated esters had moderate thermal stability with decomposition points between 210 and 260°C and number-average molecular weights of 10,000–30,000. From the evaluation of units structures of silylate it was suggested that polymer backbone was a pseudoladder structure.     

Multi-element determinations of trace elements in glass by instrumental photon activation analysis

An instrumental photon activation method is reported for multi-element determinations in glass. The concentrations of 17 elements in NBS standard glass can be determined by irradiation with 30-MeV bremsstrahlung and measurement of the resulting γ-rays with a Ge(Li) detector. The average of all relative standard deviations is 2.7%; the relative deviations from the NBS certified values range from 1.4 to 3.4%.     

Freezing of Lennard-Jones fluid in cylindrical nanopores under tensile conditions

We have shown the Lennard-Jones (LJ) phase diagram for a slit-shaped nanopore by molecular simulations and thermodynamically predicted the results with no adjustable parameter. With this success, LJ phase diagrams are predictable. In this study, the freezing of an LJ CH₄ capillary condensate under a tensile condition in a nonstructural carbon nanopore with a cylindrical geometry was examined using molecular dynamics (MD) simulation. We employ a unit cell in contact with a bulk vapor phase, which is useful for the determination of the bulk vapor pressure in equilibrium with the molecules in a pore. The MD simulation results show liquid-solid (amorphous) phase transitions with a variation in the bulk vapor pressure. The frozen particles are arranged in concentric circular regions along the wall similar to those reported by Maddox and Gubbins. The freezing points are determined from the variations in density, enthalpy, arrangement, and structural functions. The obtained liquid-solid coexistence points are found to exhibit a significant dependence of the freezing point on the equilibrium bulk vapor pressure, forming an extraordinarily skewed curve on the p-T diagram, in contrast to the bulk phase coexistence that is represented by an almost vertical line. The origin of the significant dependence is considered to be the Laplace effect on the capillary condensate similar to the case with a slit-shaped pore. A simple model, which the authors earlier presented for slit-shaped nanopores, successfully predicted the p-T relation of the freezing point for cylindrical nanopores as well.     

Effects of a nonplanar porphyrin rings on the spin-spin interactions in low-spin ferric porphyrin radical cationst

Low-spin ferric porphyrin radical cations formed by the oxidation of chloro(meso-tetraalkylporphyrinato)iron(III) followed by the addition of bulky 2-methylimidazole show antiferromagnetic coupling, which is interpreted in terms of the interaction between porphyrin a2u and iron d(xy), orbitals caused by the S4 ruffling of the porphyrin core.     

Difference in spin crossover pathways among saddle-shaped six-coordinated iron(III) porphyrin complexes

The electronic states of a series of saddle-shaped porphyrin complexes [Fe(OMTPP)L(2)](+) and [Fe(TBTXP)L(2)](+) have been examined in solution by (1)H NMR, (13)C NMR, and EPR spectroscopy and by magnetic measurements. While [Fe(OMTPP)(DMAP)(2)](+) and [Fe(TBTXP)(DMAP)(2)](+) maintain the low-spin (S = (1)/(2)) state, [Fe(OMTPP)(THF)(2)](+) and [Fe(TBTXP)(THF)(2)](+) exhibit an essentially pure intermediate-spin (S = (3)/(2)) state over a wide range of temperatures. In contrast, the Py and 4-CNPy complexes of OMTPP and TBTXP exhibit a spin transition from S = (3)/(2) to S = (1)/(2) as the temperature was decreased from 300 to 200 K. Thus, the magnetic behavior of these complexes is similar to that of [Fe(OETPP)Py(2)](+) reported in our previous paper (Ikeue, T.; Ohgo, Y.; Yamaguchi, T.; Takahashi, M.; Takeda, M.; Nakamura, M. Angew. Chem., Int. Ed. 2001, 40, 2617-2620) in the context that all these complexes exhibit a novel spin crossover phenomenon in solution. Close examination of the NMR and EPR data of [Fe(OMTPP)L(2)](+) and [Fe(TBTXP)L(2)](+) (L = Py, 4-CNPy) revealed, however, that these complexes adopt the less common (d(xz), d(yz))(4)(d(xy))(1) electron configuration at low temperature in contrast to [Fe(OETPP)Py(2)](+) which shows the common (d(xy))(2)(d(xz), d(yz))(3) electron configuration. These observations have been attributed to the flexible nature of the OMTPP and TBTXP cores as compared with that of OETPP; the relatively flexible OMTPP and TBTXP cores can ruffle the porphyrin ring and adopt the (d(xz), d(yz))(4)(d(xy))(1) electron configuration at low temperature. Therefore, this study reveals that the rigidity of porphyrin cores is an important factor in determining the spin crossover pathways.