Total Synthesis of the 7,10‐Epimer of the Proposed Structure of Amphidinolide N,Part II: Synthesis of C17–C29 Subunit and Completion of the Synthesis

The total synthesis of 7,10‐epimer of the proposed structure of amphidinolide N was accomplished. The requisite chiral C17–C29 subunit was assembled stereoselectively via Keck allylation, Shi epoxidation, diastereoselective 1,3‐reduction, and a later oxidative synthesis of the THF framework. The C1–C13 and C17–C29 subunits were successfully coupled using a Enders RAMP “linchpin” as the C14–C16 three carbon unit, thereby controlling the chirality at C14 and C16. The labile allyl epoxy moiety was successfully constructed by Grieco–Nishizawa olefination at a final stage of the synthesis.     

Structural and Kinetic Aspects of Blood Plasma Protein Adsorption on the Surface of Hydrophobic Polymers

Abstract

Due to the wide use of polymers in medicine, researchers are required to solve a very important problem–to understand the interaction between materials of nonphysiological origin and the surrounding biological liquids, and tissues, particularly blood.     

High-order harmonic generation by an ultrafast infrared pulse

Life science and biology have advanced with the progress of microscope technology. A strong desire of life scientists is to observe living cells with high spatial resolution. The development of soft x-ray microscopy using a special wavelength called the water window started in the 1970s in order to fulfill this desire. However, the photon fluxes realized so far are still insufficient for this application. Here, we review our work on a coherent water window x-ray generation based on high-order harmonics driven by an infrared pulse. Our proposed generation scheme, combining an infrared laser driver and a neutral gas medium, is efficient and scalable in output yields of the water window x-ray.     

Facile Synthesis of Novel Pentofuranose Analogs of Phospha Sugar Derivatives

Novel pentofuranose analogs of phospha sugar derivatives were synthesized starting from 1-phenyl-2-phospholene 1-oxide ( 1 ). First, the allylic oxidation of 1-phenyl-2-phospholene 1-oxide ( 1 ) with CrO 3 in Ac 2 O-AcOH or 3-hydroxy-1-phenyl-2-phospholene ( 2 ) with MnO 2 afforded 1-phenyl-4-oxo-2-phospholene 1-oxide ( 3 ). The C-5 alkylation of 3 in the presence of NaH by using benzyl bromide or methyl iodide as electrophiles afforded the target title compounds.     

A SYNTHETIC ROUTE TO 3-METHYLTHIO-2-ALKANONES STARTING FROM 3-ALKYL-2,4-PENTANEDIONES

Abstract

An efficient preparation of a 3-methylthio-2-alkanone (1) has been realized by the reaction of a 3-alkyl-2,4-pentanedione (8) with one mol-equiv of S-methyl methanethiosulfonate (4) in the presence of excess EtONa in EtOH. Furthermore, treatment of 8 with 4 and K₂CO₃ in refluxing acetone, followed by addition of MeOH and heating the resulting mixture, gave 1 in a high yield. These methods were applied to synthesis of pseudoionone.     

Vinyl Polymerization by Metal Complexes. XXIII. UV and Kinetic Studies on the Photopolymerization with Iron(III)-Amine-Carbon Tetrachloride Systems

Abstract

In order to elucidate the initiation reaction of the photopolymerization with iron(III)-amine-carbon tetrachloride systems, the photochemical reaction process among iron(III), amine, and carbon tetrachloride in methanol solution was followed at 0°C by UV spectroscopy as for iron(III) ion. The rate constants of both the reduction of iron (III) under irradiation with light and the oxidation of iron(II) in the dark were measured, and were related to the rates of photopolymerization of methyl methacrylate. Kinetic study on the photopolymerization of methyl methacrylate with iron(III)-triethylenetetramine-carbon tetrachloride system was made in parallel in methanol solution at 0°C. The initiation mechanism of the photopolymerization was postulated.     

Inclusion of Poly(ethylene glycol)s by Crystalline (R)-(1-Naphthyl)glycyl-(R)-phenylglycine

Abstract

Crystallization of (R)-(1-naphthyl)glycyl-(R)-phenyl-glycine [(R,R)-1] in the presence of oligo(ethylene glycol) dimethyl ethers 2(n) or poly(ethylene glycol)s (PEGs, 3(M_n )) afforded inclusion compounds. The ratio of (R,R)-1/the guest polymer (2 or 3) was proportional to the length of the polymer chain. The crystal structure of a hepta(ethylene glycol) dimethyl ether-included compound was disclosed by X-ray crystallography which showed that (R,R)-1 molecules form a sheet and the guest molecule penetrates the crystal lattice of (R,R)-1 through a one-dimensional channel on the sheet. Powder X-ray analysis revealed that, regardless of the length of the guest polymer, the distance between the neighboring sheets remains unchanged (12.0–12.3 Å) in these inclusion crystals. By thermal analysis, it was shown that the decomposition points of these inclusion compounds became higher with the longer PEG included. The inclusion phenomenon enabled the fractionation of PEGs with various molecular weights, among which longer PEG was preferably included.     

Theory of docking scores and its application to a customizable scoring function

In general, the docking scoring tends to have a size dependence related to the ranking of compounds. In this paper, we describe a novel method of parameter optimization for docking scores which reduce the size dependence and can efficiently discriminate active compounds from chemical databases. This method is based on a simplified theoretical model of docking scores which enables us to utilize large amounts of data of known active and inactive compounds for a particular target without requiring large computational resources or a complicated procedure. This method is useful for making scoring functions for the identification of novel scaffolds using the knowledge of active compounds for a particular target or a customized scoring function for an interesting family of drug targets.