LP99: Discovery and Synthesis of the First Selective BRD7/9 Bromodomain Inhibitor

The bromodomain‐containing proteins BRD9 and BRD7 are part of the human SWI/SNF chromatin‐remodeling complexes BAF and PBAF. To date, no selective inhibitor for BRD7/9 has been reported despite its potential value as a biological tool or as a lead for future therapeutics. The quinolone‐fused lactam LP99 is now reported as the first potent and selective inhibitor of the BRD7 and BRD9 bromodomains. Development of LP99 from a fragment hit was expedited through balancing structure‐based inhibitor design and biophysical characterization against tractable chemical synthesis: Complexity‐building nitro‐Mannich/lactamization cascade processes allowed for early structure–activity relationship studies whereas an enantioselective organocatalytic nitro‐Mannich reaction enabled the synthesis of the lead scaffold in enantioenriched form and on scale. This epigenetic probe was shown to inhibit the association of BRD7 and BRD9 to acetylated histones in vitro and in cells. Moreover, LP99 was used to demonstrate that BRD7/9 plays a role in regulating pro‐inflammatory cytokine secretion.     

An Allyl Uranium(IV) Sandwich Complex: Are ϕ Bonding Interactions Possible?

A method to explore head-to-head ϕ back-bonding from uranium f-orbitals into allyl π* orbitals has been pursued. Anionic allyl groups were coordinated to uranium with tethered anilide ligands, then the products were investigated by using NMR spectroscopy, single-crystal XRD, and theoretical methods. The (allyl)silylanilide ligand, N-((dimethyl)prop-2-enylsilyl)-2,6-diisopropylaniline (LH), was used as either the fully protonated, singly deprotonated, or doubly deprotonated form, thereby highlighting the stability and versatility of the silylanilide motif. A free, neutral allyl group was observed in UI₂(L1)₂ ( 1 ), which was synthesized by using the mono-deprotonated ligand [K][N-((dimethyl)prop-2-enyl)silyl)-2,6-diisopropylanilide] (L1). The desired homoleptic sandwich complex U[L2]₂ ( 2 ) was prepared from all three ligand precursors, but the most consistent results came from using the dipotassium salt of the doubly deprotonated ligand [K]₂[N-((dimethyl)propenidesilyl)-2,6-diisopropylanilide] (L2). This allyl-based sandwich complex was studied by using theoretical techniques with supporting experimental spectroscopy to investigate the potential for phi (ϕ) back-bonding. The bonding between U^IV and the allyl fragments is best described as ligand-to-metal electron donation from a two carbon fragment-localized electron density into empty f-orbitals.     

Modeling viscoelastic properties of triblock copolymers: A DPD simulation study

Gel systems based on self‐assembled, amphiphilic ABA triblock copolymers in midblock‐selective solvent form stable, spatially extended networks with controllable morphology and tunable viscoelastic behavior. In this work, we systematically evaluate the mechanical properties of these gels using morphology calculations, and a nonequilibrium oscillatory shear technique based on the dissipative particle dynamics (DPD) method. Our simulations demonstrate that low molecular weight triblock copolymers with incompatible blocks self‐assemble into micelles connected with bridges and loop‐like chains comprised of the solvent‐selective polymer midblocks. The fraction of bridges, ?_b, generally increases with increasing relative volume of the midblock, x, defined as the ratio of midblock and endblock volumes ( ). For our model, ?_b reaches a plateau at approximately x > 9 for a strongly selective solvent. At this limit, the value of ?_b increases from 0.40 to about 0.66 as the copolymer concentration, c, increases from 0.2 to 0.5; however, this increase is less significant at higher concentrations. The elastic response of the gel studied here is comparable with the Rouse modulus. The elastic modulus increases with polymer concentration, and it exhibits a broad peak within 6 < x < 12. Finally, we present an approximate method to predict the elastic modulus of unentangled ABA triblock copolymers based solely on the morphology of the micellar gel, which can be gleaned from equilibrium DPD simulations. We demonstrate that our simulation results are in good qualitative agreement with other theoretical predictions and experimental data. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 15–25, 2010     

Patterned Monolayers of Neutral and Charged Functionalized Manganese Arene Complexes on a Highly Ordered Pyrolytic Graphite Surface

Complex patterns : The arene manganese tricarbonyl complexes [Mn(η⁵‐2,5‐didodecoxy‐1,4‐semiquinone)(CO)₃] and [Mn(η⁶‐1,4‐dioctyloxybenzene)(CO)₃] BF₄ form patterned monolayers on the surface of highly ordered pyrolytic graphite (HOPG), as a result of hydrogen‐bonding, hydrophobic, and electrostatic interactions, leading to an ordered 2D array of manganese atoms or ions.

     

Quantifying surface coverage of colloidal silica by a cationic peptide using a combined centrifugation/time-resolved fluorescence anisotropy approach

Recent experimental studies have shown that time-resolved fluorescence anisotropy (TRFA) is a promising methodology for in situ characterization of the surface modification of aqueous silica nanocolloids. Here we provide a more fundamental insight into the principle of this approach and discuss how the adsorption parameters for a cationic peptide, Lys-Trp-Lys (denoted using the standard shortform KWK), onto Ludox nanoparticles (NPs) are linked to the rotational dynamics of rhodamine 6G (R6G) dispersed in the KWK/Ludox mixture. First, the adsorption isotherm of KWK on hydrophilic controlled pore glass (CPG-3000) was obtained using the traditional centrifugation method, which provides the total molar amount of KWK per unit surface area of the silica. Assuming that both CPG and Ludox particles possess identical surface properties when suspended in the same aqueous buffer, both materials should also have identical adsorption properties. Thus, the adsorbed amount of KWK per unit area at a given total KWK concentration, as determined by the centrifugation method, can be plotted against the fractions of R6G anisotropy decay components at the same KWK concentration to relate the anisotropy components to the absolute surface coverage. Using this approach, it was determined that the concentration of KWK at which the CPG surface was saturated corresponded to the condition g = 0 in the R6G decay, where g is the fraction of the nondecaying anisotropy component. This condition means that there is no R6G bound to the fraction of Ludox NPs with a radius R > 2.5 nm at maximum KWK coverage, consistent with the adsorbed peptide forming a continuous layer on the Ludox surface. Hence, the g value obtained from TRFA analysis can be used to assess the absolute surface coverage of monolayer coatings on colloidal nanoparticles.     

Dendron-protected Au nanoparticles--effect of dendritic structure on chemical stability

A series of gold nanoparticles stabilised by 'Newkome-type' dendritic branching has been synthesised and fully characterised. In particular, the properties and behaviour of these hybrid materials are compared with those of a previously reported set of nanoparticles stabilised by dendrons constructed using l-lysine building blocks. The rates of cyanide-induced nanoparticle decomposition were determined, and it was found that the rate of decomposition increased on the introduction of dendritic branching. Furthermore, 'Newkome-type' dendrons were significantly more effective at protecting the encapsulated gold nanoparticle than the l-lysine based dendrons. It is proposed that this observation can be explained on the basis of more effective packing and surface coverage by the 'Newkome-type' dendrons. Importantly, this study therefore demonstrates that the organic chemical structure of dendritic ligands plays a crucial role in controlling the reactivity of self-assembled hybrid nanostructures.     

Chemical reaction equilibrium in nanoporous materials: NO dimerization reaction in carbon slit nanopores

We present a molecular-level simulation study of the effects of confinement on chemical reaction equilibrium in nanoporous materials. We use the reaction ensemble Monte Carlo (RxMC) method to investigate the effects of temperature, nanopore size, bulk pressure, and capillary condensation on the nitric oxide dimerization reaction in a model carbon slit nanopore in equilibrium with a bulk reservoir. In addition to the RxMC simulations, we also utilize the molecular-dynamics method to determine self-diffusion coefficients for confined nonreactive mixtures of nitric oxide monomers and dimers at compositions obtained from the RxMC simulations. We analyze the effects of the temperature, nanopore width, bulk pressure, and capillary condensation on the reaction equilibrium with respect to the reaction conversion, fluid structure, and self-diffusion coefficients. We show that the influence of the temperature, nanopore size, and capillary condensation on the confined reaction equilibrium is quite dramatic while the effect of the bulk pressure on the reaction equilibrium in the carbon slit nanopore is only moderate. This work is an extension of previous work by Turner et al. [J. Chem. Phys. 114, 1851 (2001)] on the confined reactive nitric oxide system.     

The design and instrumentation of an experimental rig to investigate acoustic methods for the detection and location of underground piping systems

A major UK initiative, entitled ‘Mapping the Underworld’, is seeking to improve our capability of locating buried utility service infrastructure without resorting to extensive excavations. One of the four projects aims to develop and prove the efficacy of a multi-sensor device for remote buried utility service detection, location and, where possible, identification. An essential technology to be combined into the device is low-frequency acoustics, and suitable techniques for detecting buried infrastructure, in particular buried plastic water pipes, have been proposed. In order to develop and test these techniques, an experimental rig has been built. It is the design and instrumentation of this rig along with the rationale for the chosen design which is the main focus of this paper. Preliminary measurements have been made on the rig, to determine the most appropriate acoustic excitation method and to confirm that the rig is behaving as anticipated. The results of these investigations are also reported.