Two new simple iridoids from the ant-plant Myrmecodia tuberosa and their antimicrobial effects

Six iridoid derivatives (1–6), including two new compounds myrmecodoides A and B (1 and 2), were isolated from the ant-plant Myrmecodia tuberosa. Their structures were determined on the basis of spectroscopic data (¹H and ¹³C NMR, HSQC, HMBC, ¹H-¹H COSY, NOESY and HR-ESI-MS) and by comparison with the literature values. Among isolates, 3 and 4 exhibit weak antibacterial effect against Staphylococcus aureus subsp. aureus with MIC value of 100.0 μg/mL.     

Microcins, gene-encoded antibacterial peptides from enterobacteria

Microcins are gene-encoded antibacterial peptides, with molecular masses below 10 kDa, produced by enterobacteria. They are secreted under conditions of nutrient depletion and exert potent antibacterial activity against closely related species. Typical gene clusters encoding the microcin precursor, the self-immunity factor, the secretion proteins and frequently the post-translational modification enzymes are located either on plasmids or on the chromosome. In contrast to most of the antibiotics of microbial origin, which are non-ribosomally synthesized by multimodular enzymes termed peptide synthetases, microcins are ribosomally synthesized as precursors, which are further modified enzymatically. They form a restricted class of potent antibacterial peptides. Fourteen microcins have been reported so far, among which only seven have been isolated and characterized. Despite the low number of known representatives, microcins exhibit a diversity of structures and antibacterial mechanisms. This review provides an updated overview of microcin structures, antibacterial activities, genetic systems and biosyntheses, as well as of their mechanisms of action.     

Small multivalent architectures mimicking homotrimers of the TNF superfamily member CD40L: delineating the relationship between structure and effector function

Synthetic multivalent ligands, owing to the presence of multiple copies of a recognition motif attached to a central scaffold, can mediate clustering of cell surface receptors and thereby function as effector molecules. This paper dissects the relationship between structure and effector function of synthetic multivalent ligands targeting CD40, a cell surface receptor of the tumor necrosis factor receptor (TNF-R) superfamily. Triggering CD40 signaling in vivo can be used to enhance immunity against intracellular pathogens or tumors. A series of multimeric molecules has been prepared by systematically varying the shape and the valency of the central scaffold, the nature and the length of the linker as well as the sequence of the receptor binding motif. The data reported here (i) suggest that radial distribution of CD40-binding units and C3-symmetry are preferred for optimal binding to CD40 and signaling, (ii) underscore the importance of choosing an appropriate linker to connect the receptor binding motif to the central scaffold, and (iii) show the versatility of planar cyclic alpha- and beta-peptides as templates for the design of CD40L mimetics. In particular, the (Ahx)3-B trimeric scaffold-linker combination equally accommodated binding elements derived from distinct CD40L hot-spot regions including AA" loop and beta-strand E. The use of miniCD40Ls such as those reported here is complementary to other approaches (recombinant ligands, agonistic anti-receptor antibodies) and may find interesting therapeutic applications. Furthermore, the results disclosed in this paper provide the basis for future design of other TNF family member mimetics.     

Synthesis and Properties of TRANSDIP,a Rigid Chelator Built upon a Cyclodextrin Cavity: Is TRANSDIP an Authentic trans‐Spanning Ligand?

The C2-symmetrical diphosphane TRANSDIP was obtained in high yield by treating 6A,6B,6D,6E-tetramesylated, permethylated alpha-cyclodextrin with PPhLi2 in excess. The double cascade cyclisation thus produced is regioselective as phosphinidene capping involves only adjacent glucose units. It is also stereospecific, as both lone pairs on the phosphorus atoms are orientated towards the cyclodextrin axis. The restricted flexibility of the phosphorus atoms, which are part of nine-membered heterocyclic rings, is responsible for JP,C spin-spin couplings with the eight-bond distant CH2OMe carbon atoms of glucose units C and F. The treatment of TRANSDIP with Group 10 metal dihalides quantitatively gave square-planar chelate complexes, in which a M--X bond points towards the centre of the cavitand. The favourable P...P separation and the directional control of the lone pairs on the phosphorus atoms rule out the possibility of forming binuclear complexes or higher oligomers. Further, in all the complexes, the phosphorus atoms are in a trans arrangement. TRANSDIP may therefore be regarded as an authentic trans-spanning diphosphane. In the complex [NiBr2TRANSDIP], the cavity provides effective protection of the encapsulated M--X bond towards nucleophilic attack by MeLi. The same complex, upon activation with methylaluminoxane, efficiently dimerises ethene and propene.     

The 39K(2) 2(3)Sigma(g)+ state: observation and analysis

The (39)K(2) 2 (3)Sigma(g) (+) state has been observed by perturbation-facilitated infrared-infrared double resonance spectroscopy and two-photon excitation. Resolved fluorescence spectra into the a (3)Sigma(u) (+) state have been recorded. The observed vibrational levels have been assigned as the v=23-25, 27, 28, 31-33, 38-45, 47, and 53 levels by comparing the observed and calculated spectra of the 2 (3)Sigma(g) (+)-->a (3)Sigma(u) (+) transitions. Molecular constants have been obtained using a global fitting procedure with a comprehensive set of experimental data. Fine and hyperfine splittings have been resolved in the excitation spectra. Perturbations between the 2 (3)Sigma(g) (+) and 2 (3)Pi(g) states were observed. The hyperfine patterns of the 2 (3)Sigma(g) (+) levels are strongly affected by the perturbation. The perturbation-free and weakly perturbed levels follow the case b(betaS) coupling scheme, while the perturbed levels follow case b(beta J) coupling. A Fermi contact constant, b(F)=65+/-10 MHz, has been obtained. Intensity anomalies of rotational lines appeared both in the 2 (3)Sigma(g) (+) approximately 2 (3)Pi(g)<--b (3)Pi(u) excitation spectra and in the 2 (3)Sigma(g) (+) approximately 2 (3)Pi(g)-->a (3)Sigma(u) (+) resolved fluorescence spectra. These intensity anomalies can be explained in terms of a quantum-mechanical interference effect.     

Method development for a quantitative analysis performed without any standard using an evaporative light-scattering detector

A new method for quantitative analyses using an evaporative light-scattering detector (ELSD) is proposed. It is based on the preliminary determination of the calibration curve of an ELSD which correlates coefficient b and loga, the two coefficients from the equation: A=am(b), that characterize the law of the quantitative response for an ELSD. Dilutions of the mixture to be analyzed allow the determination of coefficient b for each component of the mixture. The knowledge of the b value and the experimental relationship correlating b with loga allows to determine the loga value and consequently to quantify each compound of the mixture. This method is an alternative to the quantitative method which uses an internal normalization without any response coefficient. This internal normalization method used with an ELSD provides inaccurate results and this inaccuracy increases when the analytes are in very different proportions. The relevance of the new method proposed in this work lies in the quantification of all the components present in a complex mixture when some of them are not available as standards.     

Crystal structure and photochemical behavior in solution of the 3'-N-sulfamate analogue of thymidylyl(3'-5')thymidine

The 3'-N-sulfamate analogue of thymidylyl(3'-5')thymidine (TnsoT, 1) exhibits a preference for a C3'-endo conformation in the solution and solid states. Its photochemical behavior in solution is compared to that of its natural counterpart, thymidylyl(3'-5')thymidine (TpT, 2), to get further insight into the significance of the C3'-endo conformation on the photoproduct formation at the single-stranded dinucleotide level. Irradiation at 254 nm of 1 led to the same type of photoproducts as observed with 2. However, 1 was significantly more photoreactive than 2, and accordingly, the initial rate of photoproduct formation was enhanced in accordance with its propensity to base stack compared to 2. The corresponding quantum yields were determined and showed that the enhancement factor (1 compared to 2) is moderate for the cyclobutane pyrimidine dimer (CPD) (1.26) and much higher for the (6-4) photoproduct (1.8). These data strongly suggest that the CPD and (6-4) photoproduct arise from distinct minor stacked conformations.     

Oxidation reactivity channels for 2-(pyridin-2-yl)-N,N-diphenylacetamides

Synthetic routes to 2-(pyridin-2-yl)-N,N-diphenylacetamide and 2-(6-methylpyridin-2-yl)-N,N-diphenyl-acetamide are described along with results from the chemical oxidation of these compounds with peracetic acid, m-chloroperbenzoic acid, and OXONE. In each case, oxidations generate four products in varying amounts depending on the oxidant and reaction conditions. Each product has been characterized by spectroscopic methods and the molecular structures of several of the new compounds have been confirmed by X-ray crystallography.