Testing Fluorescence Lifetime Standards using Two-Photon Excitation and Time-Domain Instrumentation: Rhodamine B,Coumarin 6 and Lucifer Yellow

Having good information about fluorescence lifetime standards is essential for anyone performing lifetime experiments. Using lifetime standards in fluorescence spectroscopy is often regarded as a straightforward process, however, many earlier reports are limited in terms of lifetime concentration dependency, solvents and other technical aspects. We have investigated the suitability of the fluorescent dyes rhodamine B, coumarin 6, and lucifer yellow as lifetime standards, especially to be used with two-photon excitation measurements in the time-domain. We measured absorption and emission spectra for the fluorophores to determine which wavelengths we should use for the excitation and an appropriate detector range. We also measured lifetimes for different concentrations, ranging from 10^?2– 10^?6 M, in both water, ethanol and methanol solutions. We observed that rhodamine B lifetimes depend strongly on concentration. Coumarin 6 provided the most stable lifetimes, with a negligible dependency on concentration and solvent. Lucifer yellow lifetimes were also found to depend little with concentration. Finally, we found that a mix of two fluorophores (rhodamine B/coumarin 6, rhodamine B/lucifer yellow, and coumarin 6/lucifer yellow) all yielded very similar lifetimes from a double-exponential decay as the separate lifetimes measured from a single-exponential decay. All lifetime measurements were made using two-photon excitation and obtaining lifetime data in the time-domain using time-correlated single-photon counting.     

Molecular structure of phthalocyaninatotin(II) studied by gas-phase electron diffraction and high-level quantum chemical calculations

The molecular structure of phthalocyaninatotin(II), Sn(II)Pc, is determined by density functional theory (DFT/B3LYP) calculations using various basis sets and gas-phase electron diffraction (GED). The quantum chemical calculations show that Sn(II)Pc has C4V symmetry, and this symmetry is consistent with the structure obtained by GED at 427 degrees C. GED locates the Sn atom at h(Sn) ) 112.8(48) pm above the plane defined by the four isoindole N atoms, and a N-Sn bond length of 226.0(10) pm is obtained. Calculation at the B3LYP/ccpVTZ/cc-pVTZ-PP(Sn) level of theory gives h(Sn) ) 114.2 pm and a N-Sn bond length of 229.4 pm. The phthalocyanine (Pc) macrocycle has a slightly nonplanar structure. Generally, the GED results are in good agreement with the X-ray structures and with the computed structure; however, the comparability between these three methods has been questioned. The N-Sn bond lengths determined by GED and X-ray are significantly shorter than those from the B3LYP predictions. Similar trends have been found for C-Sn bonds for conjugated organometallic tin compounds. Computed vibrational frequencies give five low frequencies in the range of 18-54 cm-1, which indicates a flexible molecule.     

Microwave spectra and barriers to internal rotation of z- and e-1-propenyl isocyanide

A synthetic procedure yielding a mixture of Z- and E-1-propenyl isocyanide (CH(3)CH═CHNC) is described. The microwave spectrum of this mixture has been recorded in the 12-100 GHz spectral range, and the spectra of the Z and E isomers have been assigned for the first time. Most transitions of the Z form were split into two components of equal intensity due to tunneling of the methyl group, which allowed the barrier to internal rotation of this group to be determined as 4.0124(12) kJ/mol by fitting 568 transitions with a maximum value of J = 46 using the computer program Xiam. This fit had a root-mean-square deviation as large as 4.325. The same transitions were therefore fitted anew using the more sophisticated program Erham. This fit has a rms deviation marginally better (4.136) than the Xiam fit. No split MW lines were found for E-1-propenyl isocyanide. The absence of splittings is ascribed to a barrier to internal rotation of the methyl group that is significantly higher than the barrier of the Z isomer. It is concluded that the barrier must be larger than 6 kJ/mol for the E form. The experimental work was augmented by quantum chemical calculations at CCSD/cc-pVTZ, B3LYP/cc-pVTZ, and MP2/cc-pVTZ levels of theory. The CCSD method predicts rotational constants of the Z and E forms well. The B3LYP barriers to internal rotation of a series of substituted propenes were calculated and found to be in good agreement with experiments. Calculations of the quartic centrifugal distortion constants of the two 1-propenyl isocyanides by the B3LYP and MP2 methods were less successful.     

What can a "quantum black-box" do for the inorganic thermochemist?

Enthalpies of formation of ABO3 (A = Ca, Sr, Ba; B = Ti, Zr, Hf) from the binary constituent oxides have been calculated by ab initio density functional theory. The resulting values compare well with the large number of experimental determinations reported in literature. The trends in the calculated enthalpies of formation correlate with the difference in acidity between the binary constituent oxides. Density functional theory is shown to be a valuable tool that should be used routinely in thermochemical studies of inorganic compounds.     

Validation of a one-step extraction/methylation method for determination of fatty acids and cholesterol in marine tissues

A simple and fast direct extraction/methylation with methanolic hydrogen chloride was validated for determination of fatty acids (FA) in marine tissues. Three parameters: reaction time, temperature and presence of non-polar solvent, were studied by an experimental 2(3) full factorial design. The method was validated for five different types of samples; cod liver (high lipid content >60%, mainly triacylglycerol), cod muscle (low lipid content, approximately 1%, mainly phospholipids), cod plasma (lipid content, approximately 2%, mainly lipoprotein complex, high water amount), cod testis (lipid content approximately 3%, high levels of cholesterol), and herring muscle (lipid content approximately 7%). The one-step procedure for extraction/methylation of wet tissues was compared with the traditional procedure of extraction of the lipids by the Folch method (chloroform/methanol, 2:1, v/v), followed by methylation. The two methods gave similar FA profiles. The one-step extraction/methylation procedure gave a higher recovery of the total FA than the traditional procedure. Problems with carry-over peaks of cholesterol from previous samples were avoided by application of extra long GC temperature programs. The cholesterol decomposed to some degree under the preceding methanolysis step, giving several peaks in the chromatograms. The decomposition peaks were identified by mass spectrometry as cholestdienes originating from dehydration of cholesterol, a metylether of cholesterol and a cholesteryl chloride. These cholesterol artefacts can be used for quantitative determination of cholesterol in the samples. Standard samples of cholesterol were determined with high accuracy, (R(2)>0.99), and cholesterol in cod plasma was compared with good agreement (R(2)=0.97) to an enzymatic method.     

Computational and Variable‐Temperature Infrared Spectroscopic Studies on Carbon Monoxide Adsorption on Zeolite Ca‐A

Bridged Ca ²⁺ ???CO???Ca ²⁺ complexes are formed on dual‐cation sites, constituted by a pair of nearby Ca²⁺ cations, when CO is adsorbed on zeolite Ca‐A. Two types of such species can be formed, designated S2–S1 and S1–S1 (see picture). Ca²⁺???CO monocarbonyl species are also identified, and at a relatively high CO equilibrium pressure, dicarbonyl complexes can also form.