Dimethyl sulfoxide induced structural transformations and non-monotonic concentration dependence of conformational fluctuation around active site of lysozyme

Experimental studies have observed significant changes in both structure and function of lysozyme (and other proteins) on addition of a small amount of dimethyl sulfoxide (DMSO) in aqueous solution. Our atomistic molecular dynamic simulations of lysozyme in water-DMSO reveal the following sequence of changes on increasing DMSO concentration. (i) At the initial stage (around 5% DMSO concentration) protein's conformational flexibility gets markedly suppressed. From study of radial distribution functions, we attribute this to the preferential solvation of exposed protein hydrophobic residues by the methyl groups of DMSO. (ii) In the next stage (10-15% DMSO concentration range), lysozome partially unfolds accompanied by an increase both in fluctuation and in exposed protein surface area. (iii) Between 15-20% concentration ranges, both conformational fluctuation and solvent accessible protein surface area suddenly decrease again indicating the formation of an intermediate collapse state. These results are in good agreement with near-UV circular dichroism (CD) and fluorescence studies. We explain this apparently surprising behavior in terms of a structural transformation which involves clustering among the methyl groups of DMSO. (iv) Beyond 20% concentration of DMSO, the protein starts its final sojourn towards the unfolding state with further increase in conformational fluctuation and loss in native contacts. Most importantly, analysis of contact map and fluctuation near the active site reveal that both partial unfolding and conformational fluctuations are centered mostly on the hydrophobic core of active site of lysozyme. Our results could offer a general explanation and universal picture of the anomalous behavior of protein structure-function observed in the presence of cosolvents (DMSO, ethanol, tertiary butyl alcohol, dioxane) at their low concentrations.     

Kinetics of adsorption of metal ions on inorganic materials: A review

It is necessary to establish the rate law of adsorbate-adsorbent interactions to understand the mechanism by which the solute accumulates on the surface of a solid and gets adsorbed to the surface. A number of theoretical models and equations are available for the purpose and the best fit of the experimental data to any of these models is interpreted as giving the appropriate kinetics for the adsorption process. There is a spate of publications during the last few years on adsorption of various metals and other contaminants on conventional and non-conventional adsorbents, and many have tried to work out the kinetics. This has resulted from the wide interest generated on using adsorption as a practical method for treating contaminated water. In this review, an attempt has been made to discuss the kinetics of adsorption of metal ions on inorganic solids on the basis of published reports. A variety of materials like clays and clay minerals, zeolites, silica gel, soil, activated alumina, inorganic polymer, inorganic oxides, fly ash, etc. have been considered as the adsorbents and cations and anions of As, Cd, Co, Cr, Cu, Fe, Hg, Mn, Ni, Pb, Se, and Zn as adsorbate have been covered in this review. The majority of the interactions have been divided into either pseudo first order or second order kinetics on the basis of the best fit obtained by various groups of workers, although second order kinetics has been found to be the most predominant one. The discussion under each category is carried out with respect to each type of metal ion separately. Application of models as given by the Elovich equation, intra-particle diffusion and liquid film diffusion has also been shown by many authors and these have also been reviewed. The time taken for attaining equilibrium in each case has been considered as a significant parameter and is discussed almost in all the cases. The values of the kinetic rate coefficients indicate the speed at which the metal ions adsorb on the materials and these are discussed in all available cases. The review aims to give a comprehensive picture on the studies of kinetics of adsorption during the last few years.     

Co-existence of multiple attractors in the PWM controlled DC drives

DC shunt and series drives are extensively used in the industry. The occurrence of bifurcation and chaos in dc shunt and permanent magnet drives are well known. It is observed that the behavior of the drives not only depends on the value of system parameters but also on the value of initial conditions. Multiple attractors can exist for same parameter value. Different choice of initial conditions gives different periodic behavior of the system. The drive is intended to operate in a parameter range to give period-1 behavior. We report the existence of sub- harmonic oscillations in the period-1 region of the bifurcation diagram along with co-existing attractor with fractal basin boundaries in PWM controlled dc series drives. The series drive is extensively used in electric traction and other applications. The dc drives are run with dc input voltage. This dc voltage may be derived from a dc source or an ac source with a rectifier. The dc series drive shows different bifurcation behavior when different types of input voltage and switching elements are used. The existence of period-1, period-2 and period-4 orbits are observed with different initial conditions in the desired period-1 region of the bifurcation diagram. The dependence of system’s behavior on initial condition may render the system’s behavior unpredictable. These phenomena may have serious implication in performance.     

Ion solvation in biologically active magnesium salt with lactose–water mixed solvent system at different temperatures: a thermo-acoustics study

This paper presents the ion-solvations in biologically important metal ion like magnesium in lactose–water mixed solvent systems at different temperatures. The investigation involves the measurement of ultrasonic velocity, density and viscosity of different concentration of magnesium sulphate in various proportions of lactose–water mixed solvents at temperature 303.15, 308.15, 313.15 K and at atmospheric pressure. Different thermo-acoustic parameters have been calculated from the measured values and have been discussed in the light of ion–solvent interactions.     

Process monitoring of polymers by in-line ATR-IR, NIR and Raman spectroscopy and ultrasonic measurements

The aim of the present work is to show that spectroscopic and ultrasonic methods are powerful in situ methods for monitoring polymerization processes and for the determination of the composition of polymer blends and additives during extrusion. Quantitative analysis carried out with chemometric methods can determine the composition of multicomponent polymer mixtures and predict real world samples in real-time during extrusion. Examples are the modification of hyperbranched poly(urea-urethane)s, the polymerization of MMA, the real-time determination of flame retardants in PA, and the determination of the composition of the blend PE/PS. To cite this article: D. Fischer et al., C. R. Chimie 9 (2006).     

Design of Supported Organocatalysts from Carboxylic Acids for the Mannich-Type Synthesis of β-Amino Carbonyl Compounds

New supported acidic organocatalysts were prepared by the impregnation of three carboxylic acids (CF₃COOH, CCl₃COOH, and CH₃COOH) on silica support at room temperature in diethyl ether. The catalysts were characterized by scanning electron microscopy, energy dispersion X-ray analysis (EDX), Brunauer-Emmett-Teller-surface-area-analysis (BET), thermogravitational analysis, Fourier transform infrared, and powder X-ray diffractometry analysis. These solid acids were observed as highly efficient reusable catalysts at room temperature for the selective synthesis of β-amino carbonyl compounds via Mannich-type reactions of acetophenone, arylamine and arylaldehydes using two different conditions in CH₂Cl₂ solution and solvent-free grinding within a short time. The more acidic two catalysts could be recycled for up to five cycles with a small loss in catalytic activity.     

Efficient and selective alkylation of arenes and heteroarenes with benzyl and allyl ethers using a Ir/Sn bimetallic catalyst

A high-valent heterobimetallic catalyst namely [Ir₂(COD)₂(SnCl₃)₂(Cl)₂(μ-Cl)₂] (5 mol %), or dual catalyst system of [Ir(COD)Cl]₂ (1 mol %) and SnCl₄ (4 mol %), promotes the benzylation or allylation of arenes and heteroarenes using ethers as the alkylating agents. An electrophilic mechanism is proposed from a Hammett correlation.     

Cooperative Friedel-Crafts catalysis in heterobimetallic regime: alkylation of aromatics by pi-activated alcohols

The highly active Friedel-Crafts alkylation (FCA) catalyst, [Ir(COD)Cl(SnCl3)(SnCl4)(arene)]+Cl- (1-SnCl4), is easily generated in one-pot from [Ir(COD)Cl]2 or [Ir(COD)(mu-Cl)Cl(SnCl3)]2 (1) and SnCl4. The reaction of arenes, heteroarenes with benzyl, and allyl alcohols is promoted by 1-SnCl4 (1 mol %) with high turnover frequency. Kinetic evidence is presented to establish FCA pattern. From dual-catalyst combination studies varying the transition metal and main group metal partner, the efficiency of the present catalysts is attributed to the electrophilic "IrIII-SnIV" core.