Radical scavenging activity of sterically hindered catecholate and o-amidophenolate complexes of LSbPh3 type

The radical scavenging effect of the substituted catecholates (1-3, 6) and o-amidophenolates (4, 5) of triphenylantimony(V) in reactions with DPPH^• radical and in a process of oleic acid peroxidation was studied in details. Complexes 1-6 show the high activity in radical scavenging reactions with DPPH^• radical leading to disappearance of radical species. Complexes were demonstrated to be high-efficient inhibitors of chain-radical process of the peroxidation of oleic acid as well as the effective destructors of the formed hydroperoxides. It was found that the effectiveness of complexes studied in the inhibition of the peroxidation of oleic acid depends on the first oxidation potential of complex.     

Primer extension reactions as a tool to uncover folding motifs within complex G-rich sequences: analysis of the human KRAS NHE

We employed primer extension reactions to uncover folding motifs in a nuclease hypersensitive element (NHE) with a complex guanine pattern, located in the human KRAS promoter. We also identified and characterized a new G-rich motif of 21 nt capable of forming a parallel G-quadruplex that is disrupted by protein UP1.     

Absorption and emission spectra of fluorescent silica nanoparticles from TD-DFT/MM/PCM calculations

A multi-scale computational protocol, which combines Quantum Mechanics and Molecular Mechanics (QM/MM) calculations with the polarisable continuum model (PCM), has been used to study the tetramethylrhodamine isothiocyanate (TRITC) fluorophore, embedded in three different environments, namely in water, on an amorphous silica surface and covalently encapsulated in a silica nanoparticle (C dot). Absorption and emission spectra have been simulated by using TD-B3LYP/PCM calculations, performed on the TRITC ground and excited state geometries, optimized at the QM/MM level. The results are in good agreement with experimental data confirming the caging effect played by the silica shell on the mobility of the TRITC molecule when covalently encapsulated in silica nanoparticles. This could result in a decrease of the nonradiative decay rate and thus an increase of the quantum yield of the molecule.     

病毒如何传播之不确定性未来

长期以来,天文学家精确的预测令世人惊讶。预言3000年4月26日,日全食可观察带,将顺着南美洲、大西洋和北非一线延伸,这一预测没有人反对。但试图描述病原体未来传播的科学家,必须面对非常大的不确定性。研究人员既缺乏关于传染病如何传播的可靠数据,感染能力的微小差异又可以成倍地扩大病毒的传播,从而难以预测各类流行病的严重程度。来自伊利诺伊大学的Nigel Goldenfeld和他的同事,最近以伊利诺伊州为例,开发了一个模型,评估非药物干预时COVID-19病毒传播的短期影响。研究者还探索和量化了模型的局限性,阐明了它无法预测的场景。他们使用该模型,向公民、临床医生和决策者,作出了示范性展示。     

Fluorescence spectra of organic dyes in solution: a time dependent multilevel approach

Classical all-atom molecular dynamics (MD) simulations and quantum mechanical (QM) time-dependent density functional theory (TD-DFT) calculations are employed to study the conformational and photophysical properties of the first emitter excited state of tetramethyl-rhodamine iso-thiocyanate fluorophore in aqueous solution. For this purpose, a specific and accurate force field has been parameterised from QM data to model the fluorophore's first bright excited state. During the MD simulations, the consequences of the π→π* electronic transition on the structure and microsolvation sphere of the dye has been analysed in some detail and compared to the ground state behaviour. Thereafter, fluorescence has been calculated at the TD-DFT level on configurations sampled from the simulated MD trajectories, allowing us to include time dependent solvent effects in the computed emission spectrum. The latter, when compared with the absorption spectrum, reproduces well the experimental Stokes shift, further validating the proposed multilevel computational procedure.     

Multiple tandem mass spectrometry-based investigation of the behaviour of some thiazol-benzimidazolones and 2-benzimidazolylsulfanyl ethanones

The behaviour in electrospray conditions of a series of thiazol-benzimidazolones and 2- benzimidazolylsulphanyl ethanones has been studied by means of multiple tandem mass spectrometry experiments. Even though the experimental conditions were the same, different behaviour is observed for the two classes of compounds. In the case of thiazol-benzimidazolones, the formation of a protonated complex with CH3OH employed as solvent is observed, but in the case of 2-benzimidazolylsulphanyl ethanones the formation of MNa+ ions is privileged. This behaviour has been related to molecular structure. The collisionally-induced decompositions of MH+ ions have been rationalised in terms of the Stevenson-Audier and even-electron rules, as well as on the basis of proton affinity data. Thus, protonated thiazol-benzimidazolones undergo facile loss of CO and a series of different decomposition pathways involving cleavage of the thiazolone ring that reflect the structure of the neutral fragments. In contrast, the decompositions of the protonated 2-benzimidazolylsulphanyl ethanones are mainly related to the piperazine moiety, suggesting that the protonation takes place on this substructural unit.     

Organocatalytic regioselective Michael additions of cyclic enones via asymmetric phase transfer catalysis

Cyclohexanone and cycloheptanone can be enantioselectively functionalized in the 3-position with up to 92% ee and 87% ee, respectively, by the base-promoted dimerization of the corresponding enones using 3,4,5-tribenzyloxybenzyl cinchoninium bromide, as a new effective catalyst.