An Organoruthenium Anticancer Agent Shows Unexpected Target Selectivity For Plectin

Organometallic metal(arene) anticancer agents require ligand exchange for their anticancer activity and this is generally believed to confer low selectivity for potential cellular targets. However, using an integrated proteomics-based target-response profiling approach as a potent hypothesis-generating procedure, we found an unexpected target selectivity of a ruthenium(arene) pyridinecarbothioamide (plecstatin) for plectin, a scaffold protein and cytolinker, which was validated in a plectin knock-out model in vitro. Plectin targeting shows potential as a strategy to inhibit tumor invasiveness as shown in cultured tumor spheroids while oral administration of plecstatin-1 to mice reduces tumor growth more efficiently in the invasive B16 melanoma than in the CT26 colon tumor model.     

Multiple Scales via Galerkin Projections: Approximate Asymptotics for Strongly Nonlinear Oscillations

The method of multiple scales and the related method of averaging are commonly used tostudy slowly modulated oscillations. If the system of interest is a slightlyperturbed harmonic oscillator, then these techniques can be applied easily. If the unperturbed system is strongly nonlinear (though possiblyconservative), then these methods can run into difficulties due to the impossibilityof carrying out required analytical operations in closed form.In this paper, we abandon the requirement of closed form analyticaltreatment at all stages. Instead, Galerkin projections are used toobtain approximate realizations of the method of multiple scales. Thispaper adapts recent work using similar ideas for approximaterealizations of the method of averaging. A key contribution of thepresent work is in the systematic identification and removal of secularterms in the general nonlinear case, a procedure that is more difficultthan for the perturbed harmonic oscillator case, and that is unnecessaryfor averaging.A strength of the present work is that the heuristics (Galerkin)and asymptotics (multiple scales) are kept distinct,leaving room for systematic refinement of the formerwithout compromising the asymptotic features of the latter.     

A simple route to 9-fluorenylidenes by domino Suzuki/Heck coupling reactions

A palladium catalyzed domino intermolecular Suzuki followed by intramolecular Heck coupling is described. This strategy afforded a novel and convenient synthesis of various 9-fluorenylidene derivatives in one-pot under relatively mild reaction condition.     

Particle deposition onto Janus and patchy spherical collectors

An Eulerian model (convection-diffusion-migration equation) is presented to study colloid deposition behavior on Janus and patchy spherical collectors using Happel cell geometry. The model aims to capture the effect of the collector surface charge heterogeneity on the particle deposition rate. Two separate cases of surface charge distribution are presented. In the first case, the surface heterogeneity is modeled as half the collector favoring deposition and the other half hindering it (Janus collectors). For the second case, the surface heterogeneity is modeled as alternate stripes of attractive and repulsive regions on the collector (patchy collectors). The model also considers fluid flow approaching the collector at different angles in addition to the standard gravity assisted and gravity hindered flow conditions to analyze the effect of the collector orientation on the deposition. It was observed that particles tend to deposit at the edges of the favorable stripes and the extent of this preferential accumulation varies along the tangential position of the collector due to the nonuniform nature of the collector. The predicted deposition behavior is compared to the patchwise heterogeneity model. The study brings to fore how recent developments in synthesis of chemically heterogeneous particles and beads can be used for improved particle capture in porous media and for designing filter beds with enhanced life.     

An off-lattice, self-learning kinetic Monte Carlo method using local environments

We present a method called local environment kinetic Monte Carlo (LE-KMC) method for efficiently performing off-lattice, self-learning kinetic Monte Carlo (KMC) simulations of activated processes in material systems. Like other off-lattice KMC schemes, new atomic processes can be found on-the-fly in LE-KMC. However, a unique feature of LE-KMC is that as long as the assumption that all processes and rates depend only on the local environment is satisfied, LE-KMC provides a general algorithm for (i) unambiguously describing a process in terms of its local atomic environments, (ii) storing new processes and environments in a catalog for later use with standard KMC, and (iii) updating the system based on the local information once a process has been selected for a KMC move. Search, classification, storage and retrieval steps needed while employing local environments and processes in the LE-KMC method are discussed. The advantages and computational cost of LE-KMC are discussed. We assess the performance of the LE-KMC algorithm by considering test systems involving diffusion in a submonolayer Ag and Ag-Cu alloy films on Ag(001) surface.     

Remarkably high catalytic activity of the Ru(III)(edta)/H2O2 system towards degradation of the azo-dye Orange II

The Ru(III)(edta)/H(2)O(2) system (edta(4-) = ethylenediaminetretaacetate) was found to degrade the azo-dye Orange II at remarkably high efficiency under ambient conditions. Catalytic degradation of the dye was studied by using rapid-scan spectrophotometry as a function of [H(2)O(2)], [Orange II] and pH. Spectral analyses and kinetic data point towards a catalytic pathway involving the rapid formation of [Ru(III)(edta)(OOH)](2-) followed by the immediate subsequent degradation of Orange II prior to the conversion of [Ru(III)(edta)(OOH)](2-) to [Ru(IV)(edta)(OH)](-) and [Ru(V)(edta)(O)](-)via homolysis and heterolysis of the O-O bond, respectively. The higher oxidation state Ru(IV) and Ru(V) complexes react three orders of magnitude slower with Orange II than the Ru(III)-hydroperoxo complex. In comparison to biological oxygen transfer reactions, the Ru(edta) complexes show the reactivity order Compound 0 ? Compounds I and II.     

Kinetics and mechanism of NO production in the Ru(III)-(edta) mediated oxidation of L-arginine with H(2)O(2)

The kinetics of the Ru(III)-(edta) (edta(4-) = ethylenediaminetetraacetate) catalyzed oxidation of l-arginine by H(2)O(2) mimicking the action of nitric oxide synthases (NOSs) has been studied spectrophotometrically. The time course of the reaction of [Ru(V)(edta)O](-) with l-arginine was followed at 390 nm under catalytic turn-over conditions. Formation of NO in the reacting system has been confirmed with an isolated nitric oxide free radical analyzer. A detailed reaction mechanism in agreement with the spectral and kinetic data is presented.     

Fluoroallylboration-olefination for the synthesis of (Z)-4,4-difluoropent-2-enoates and 5,5-difluoro-5,6-dihydropyran-2-ones

Horner-Wadsworth-Emmons (HWE) or Still-Gennari olefination of TBS-protected 3,3-difluoro-4-hydroxy-2-ones, derived from the difluoroallylboration of aldehydes, provides the Z-isomer of 4,4,-difluoropent-2-enoates. These, upon hydrolysis, followed by Yamaguchi cyclization, afford 5,5-difluoro-4-methyl-5,6-dihydro-α-pyrones in high yields.     

An Excursion-Theoretic Approach to Stability of Discrete-Time Stochastic Hybrid Systems

We address stability of a class of Markovian discrete-time stochastic hybrid systems. This class of systems is characterized by the state-space of the system being partitioned into a safe or target set and its exterior, and the dynamics of the system being different in each domain. We give conditions for L ₁-boundedness of Lyapunov functions based on certain negative drift conditions outside the target set, together with some more minor assumptions. We then apply our results to a wide class of randomly switched systems (or iterated function systems), for which we give conditions for global asymptotic stability almost surely and in L ₁. The systems need not be time-homogeneous, and our results apply to certain systems for which functional-analytic or martingale-based estimates are difficult or impossible to get.