Anatomy of an energy transfer event in a liquid: the high-energy rotational relaxation of OH in solution

The photochemical generation of highly rotationally excited diatomics affords us an intriguing way to study energy relaxation processes in solution. Because excited products involve only a single intramolecular degree of freedom and because their relaxations can lie well outside of the linear-response regime, it may be possible to infer detailed molecular mechanisms for these processes just from transient absorption measurements. In this paper we describe a theoretical study of the rotational relaxation of a new candidate for such measurements, OH radicals. Much as we saw in our previous studies of rotationally hot CN radicals, molecular dynamics simulations of OH relaxation predict that the rotational motion should trigger a structural change in the surrounding solvent, decreasing the rotational friction and allowing the OH to rotate coherently for a dozen rotational periods. The mass distribution in OH, however, gives it a much faster rotational period and significantly different kinematics. These differences end up making it possible to identify the separate molecular events taking place at the onset of the relaxation (an unusual occurrence for a liquid-state process) and to weigh in on what collisions are really like in a liquid.     

Vibrational spectroscopy of structural defects in oligothiophenes

Vibrational spectra of oligothiophenes with structural defects are calculated within the density-functional-theory methodology. The effects of the defective αβ linkages on the infrared (IR) and Raman spectra are characterized from calculations of all isomers up to the hexamer. The signatures of αβ linked monomers can be found in IR spectra from broken symmetry arguments which result in absorptions localized in the defective region. The positions of the absorption peaks in the Raman spectra seem to be unaffected by the presence of such defects; however, strong reductions in the intensities are observed because of the shortening of the conjugation length.     

Anomalously slow solvent structural relaxation accompanying high-energy rotational relaxation

Experimental and theoretical work on the relaxation of rapidly rotating solutes in liquids have pointed out a number of striking features. Even in rapidly relaxing solvents, the relaxation proceeds quite slowly, exhibiting a manifestly nonlinear response that depends explicitly on the initial rotational energy. In this paper, we show how the long-time behavior, in particular, stems from a strong coupling of solute orientation to local solvent geometry. This coupling creates a rotational friction that decreases sharply with rotational energy, allowing for the protracted survival of not only high-angular-momentum rotational states but the cavity-like low-friction solvent geometries. We show, further, that the slow dynamics is dynamically heterogeneous. The distribution of excited rotors is marked by a distinct population of slowly relaxing hot rotational states. This population can be traced directly to the small subset of liquid configurations that happen to have low rotational friction values at the instant at which the rapid rotation started, indicating an unusual failure of the normally chaotic environment of a liquid to randomize initial conditions.     

Preferential solvation dynamics in liquids: how geodesic pathways through the potential energy landscape reveal mechanistic details about solute relaxation in liquids

It is not obvious that many-body phenomena as collective as solute energy relaxation in liquid solution should ever have identifiable molecular mechanisms, at least not in the sense of the well-defined sequence of molecular events one often attributes to chemical reactions. What can define such mechanisms, though, are the most efficient relaxation paths that solutions take through their potential energy landscapes. When liquid dynamics is dominated by slow diffusive processes, there are mathematically precise and computationally accessible routes to searching for such paths. We apply this observation to the dynamics of preferential solvation, the relaxation around a newly excited solute by a solvent composed of different components with different solvating abilities. The slow solvation seen experimentally in these mixtures stems from the dual needs to compress the solvent and to do solvent-solvent exchanges near the solute. By studying the geodesic (most efficient) paths for this combined process in a simple atomic liquid mixture, we show that the mechanism for preferential solvation features a reasonably sharp onset for slow diffusion, and that this diffusion involves a sequential, rather than concerted, series of solvent exchanges.     

Arsenic-Induced Biochemical Changes in Labeo rohita Kidney: An FTIR Study

ABSTRACT

Arsenic is a toxic heavy metal that occurs naturally in water, soil, and air. It is widespread in the environment as a consequence of both anthropogenic and natural processes. In the current study, an attempt has been made to analyze the arsenic-induced molecular changes in macromolecular components like proteins and lipids in the kidney tissues of edible fish Labeo rohita using Fourier transform infrared (FTIR) spectroscopy. The FTIR spectrum of kidney tissue is quite complex and contains several bands arising from the contribution of different functional groups. The detailed spectral analyses were performed in three distinct wave number regions, namely 3600–3050 cm^?1, 3050–2800 cm^?1, and 1800–800 cm^?1. The current study shows that the kidney tissues are more vulnerable to arsenic intoxication. FTIR spectra reveal significant differences in both absorbance intensities and areas between control and arsenic-intoxicated kidney tissues; this result indicates that arsenic intoxication induces significant alteration on the major biochemical constituents such as lipids and proteins and leads to compositional and structural changes in kidney tissues at the molecular level. The current study confirms that FTIR spectroscopy can be successfully applied to toxicologic and biological studies.     

Vibrational energy relaxation of large-amplitude vibrations in liquids

Given the limited intermolecular spaces available in dense liquids, the large amplitudes of highly excited, low frequency vibrational modes pose an interesting dilemma for large molecules in solution. We carry out molecular dynamics calculations of the lowest frequency ("warping") mode of perylene dissolved in liquid argon, and demonstrate that vibrational excitation of this mode should cause identifiable changes in local solvation shell structure. But while the same kinds of solvent structural rearrangements can cause the non-equilibrium relaxation dynamics of highly excited diatomic rotors in liquids to differ substantially from equilibrium dynamics, our simulations also indicate that the non-equilibrium vibrational energy relaxation of large-amplitude vibrational overtones in liquids should show no such deviations from linear response. This observation seems to be a generic feature of large-moment-arm vibrational degrees of freedom and is therefore probably not specific to our choice of model system: The lowest frequency (largest amplitude) cases probably dissipate energy too quickly and the higher frequency (more slowly relaxing) cases most likely have solvent displacements too small to generate significant nonlinearities in simple nonpolar solvents. Vibrational kinetic energy relaxation, in particular, seems to be especially and surprisingly linear.     

The effect of arsenic exposure on the biochemical and mineral contents of Labeo rohita bones: An FT-IR study

Arsenic compounds are ubiquitous and widespread in the environment as a result of natural or anthropogenic occurrence. Fish are the major source of protein for human consumption. They are also a source of contamination, because of the amounts of heavy elements they can contain, some of which are highly toxic. Fish bones are high in calcium, which is an essential mineral for normal body function. It consists of water, organic material, and mineral matter. Chelating agents have been used clinically as antidotes for acute and chronic metal intoxications. In the present study, an attempt is made to investigate the bio-accumulation of arsenic and its effect on the biochemical and mineral contents of Labeo rohita bones using, Fourier transform infrared (FT-IR) spectroscopy. The results of the present study indicate that arsenic exposure induces significant reduction on the biochemical and mineral contents of the L. rohita bones. Further, the DMSA treatment significantly improves these levels. This shows that DMSA is an effective chelator for arsenic toxicity. Quantitative curve-fitting analyses of amide I band have proved useful in studying the nature and the extent of protein conformational changes. A decrease in α-helical and random coil structures and an increase in β-sheet structures have been observed due to arsenic exposure. In conclusion, the present study shows that the FT-IR spectroscopy coupled with second derivative and curve-fitting analysis gives useful information about the biochemical and mineral contents of the L. rohita bones.     

FTIR study of zinc-induced biochemical changes in the liver of Indian carp <Emphasis Type="Italic">Labeo rohita</Emphasis>

Zinc is an essential metal for different physiological functions and becomes toxic when elevated concentrations are introduced into the environment. In the present study, an attempt is made to analyze zinc-induced biochemical changes in the liver tissues of freshwater fingerlings of Labeo rohita using Fourier Transformation Infrared Spectroscopy. Several important features have been observed in the FTIR spectra of zinc-intoxicated liver tissues, namely, altered membrane lipid, altered protein profile, and increased glycogen content, indicating an alteration in the lipid and protein profiles leading to modification in membrane composition. Further, it is observed that acute exposure to zinc causes some alteration in protein profile with a decrease in α-helix and an increase in random coil structure. Treatment with the chelating agent D-penicillamine reduces the biochemical contents in the liver tissues. This shows that D-penicillamine is a good antidote for zinc toxicity. Published in Zhurnal Prikladnoi Spektroskopii, Vol. 75, No. 5, pp. 746–752, September–October, 2008.     

Fifth-order raman spectrum of an atomic liquid: simulation and instantaneous-normal-mode calculation

Experimental artifacts and technical difficulties in carrying out theoretical calculations have consistently frustrated attempts to obtain the two-dimensional (5th-order) Raman spectrum of a liquid. We report here a new theoretical development: the first microscopic numerical simulation of the 5th-order Raman signal in a liquid. Comparison with an instantaneous-normal-mode treatment, a fully microscopic model which interprets liquid dynamics as arising from coherent harmonic modes, shows that the 5th-order spectrum reveals profound effects stemming from dynamical anharmonicity.