SENSITIZED PHOTOOXIDATION OF AMINO ACIDS: EFFECTS ON THE REACTIVITY OF THEIR PRIMARY AMINE GROUPS WITH FLUORESCAMINE AND O-PHTHALALDEHYDE

Abstract— The photooxidation of his, met, trp and tyr with methylene blue and eosin as sensitizers resulted in a loss of primary amine reactivity as measured with fluorescamine and o-phthalaldehyde. The rates of oxygen uptake and of loss of primary amine reactivity with illumination was characteristic for each amino acid. Glycine did not photooxidize and showed no change in primary amine reactivity. Primary amine reactivity of the N -acetyl derivatives of these amino acids was negligible and during photooxidation the reactivity increased slowly with N -acetylhis and N -acetyltrp while the reactivity of N -acetylmet and N -acetyltyr did not change. Imidazole and indole also showed a slow increase in primary amine reactivity during sensitized photooxidation. The rate of oxygen uptake and primary amine reactivity loss during the sensitized photooxidation of his and met was markedly increased in deuterium oxide. This indicated that singlet oxygen was involved. Radical scavengers did not affect the rates indicating that free radical intermediates were not involved. Primary amine reactivity loss is probably due to intra- and/or inter-molecular secondary dark reactions between unknown initial oxygenation products and primary amino groups.     

Lewis Superacidic Divalent Bis(m-terphenyl)element Cations [(2,6-Mes2C6H3)2E]+ of Group 13 Revisited and Extended (E=B,Al, Ga,In, Tl)

In a combined experimental and computational study, the molecular and electronic structures of the divalent bis(m-terphenyl)element cations [(2,6-Mes₂C₆H₃)₂E]⁺ of group 13 ( 1 , E=B; 2 , E=Al; 3 , E=Ga; 4 , E=In; 5 , E=Tl) were investigated. The preparation and characterization of 2 , 3 and 5 were previously reported by Wehmschulte's (Organometallics 2004 , 23, 1965–1967; J. Am. Chem. Soc. 2003 , 125, 1470–1471) and our groups (Organometallics 2009 , 28, 6893–6901). The indinium ion 4 was prepared and fully characterized for the first time. Attempts to prepare the borinium ion 1 by fluoride or hydride abstraction were unsuccessful. The electronic structures of 1 – 5 and the stabilization by the bulky m-terphenyl substituents were analyzed using quantum chemical calculations and compared to the divalent bis(m-terphenyl)pnictogenium ions [(2,6-Mes₂C₆H₃)₂E]⁺ of group 15 ( 6 , E=P; 7 , E=As; 8 , E=Sb; 9 , E=Bi) previously investigated by our group (Angew. Chem. Int. Ed. 2018 , 57, 10080–10084). The calculated fluoride ion affinities (FIA) of 1–9 are higher than that of SbF₅, which classifies them as Lewis superacids.     

Quantitative Evaluation of Infrared Absorbance Spectra – Lorentz Profile versus Lorentz Oscillator

We present the theoretical basis for a profound upgrade of the method of absorbance band fitting (“band deconvolution”), which requires only minute changes in the code of corresponding spectrometer software. This upgrade is based on a (re-)connection of the damped harmonic oscillator model (“Lorentz oscillator”) and the Lorentz profile used for band fitting. Based on this reconnection, we provide a proper extension to multiple oscillators. As a result, band fitting allows directly obtaining all oscillator parameters with very good accuracy, at least for the not too strong oscillators present in organic and biological matter. Accordingly, this could be the initial spark to open the way to a long-awaited paradigm shift in infrared spectroscopy: Away from a mere oscillator position-based, towards an also intensity-based quantitative interpretation of spectra. As an extra, absorbance band fitting (“Poor Man's Dispersion Analysis”), allows to obtain the index of refraction function in one go.     

Beer's Law-Why Integrated Absorbance Depends Linearly on Concentration

As derived by Max Planck in 1903 from dispersion theory, Beer's law has a fundamental limitation. The concentration dependence of absorbance can deviate from linearity, even in the absence of any interactions or instrumental nonlinearities. Integrated absorbance, not peak absorbance, depends linearly on concentration. The numerical integration of the absorbance leads to maximum deviations from linearity of less than 0.1 %. This deviation is a consequence of a sum rule that was derived from the Kramers-Kronig relations at a time when the fundamental limitation of Beer's law was no longer mentioned in the literature. This sum rule also links concentration to (classical) oscillator strengths and thereby enables the use of dispersion analysis to determine the concentration directly from transmittance and reflectance measurements. Thus, concentration analysis of complex samples, such as layered and/or anisotropic materials, in which Beer's law cannot be applied, can be achieved using dispersion analysis.     

Stable oxygen isotopes from theropod dinosaur tooth enamel: interlaboratory comparison of results and analytical interference by reference standards

Although previous work has demonstrated that biological phosphates ('biophosphates') record significant changes in delta18O associated with variations in local climate and seasonality, the repeatability of these analyses between laboratories has not previously been tested. We serially sampled enamel on four Cretaceous dinosaur teeth for phosphate delta18O analysis at up to three different facilities. With the exception of one set of unprocessed enamel samples, the material supplied to each laboratory was chemically processed to silver phosphate. Each laboratory analyzed sample sets by pyrolysis (thermochemical decomposition) in a ThermoFinnigan TC/EA attached to a ThermoFinnigan Delta Plus mass spectrometer. Significant interference between phosphate samples and the NIST reference material 8557 barium sulfate (NBS 127) distorts some of the results. Samples analyzed immediately following NBS 127 may be depleted by 6 per thousand isotopically and in instrument peak amplitude response by 80%. Substantial interference can persist over the subsequent 20 silver phosphate samples, and can influence the instrument peak amplitude response from some organic standards. Experiments using reagent-grade silver phosphate link these effects to divalent cations, particularly Ca2+ and Ba2+, which linger in the reactor and scavenge oxygen evolved from pyrolysis of subsequent samples. Unprocessed enamel includes 40 wt% calcium and self-scavenges oxygen, disrupting the isotopic measurements for the first half of a set and depleting subsequent organic standards by up to 9 per thousand. In sets without NBS 127 or calcium, such interference did not occur and an interlaboratory comparison of results from enamel shows reproducible, significantly correlated peaked delta18O patterns with a 2-3 per thousand dynamic range, consistent with previous results from contemporaneous teeth. Whereas both unprocessed enamel and the NBS 127 barium sulfate should be applied to biological phosphate ('biophosphate') stable isotope research with caution, seasonal variations in enamel phosphate delta18O are a paleoecologically valuable, reproducible phenomenon in theropod dinosaur teeth.     

Monitoring the Reversibility of GPCR Signaling by Combining Photochromic Ligands with Label-free Impedance Analysis

G protein-coupled cell surface receptors (GPCR) trigger complex intracellular signaling cascades upon agonist binding. Classic pharmacological assays provide information about binding affinities, activation or blockade at different stages of the signaling cascade, but real time dynamics and reversibility of these processes remain often disguised. We show that combining photochromic NPY receptor ligands, which can be toggled in their receptor activation ability by irradiation with light of different wavelengths, with whole cell label-free impedance assays allows observing the cell response to receptor activation and its reversibility over time. The concept demonstrated on NPY receptors may be well applicable to many other GPCRs providing a deeper insight into the time course of intracellular signaling processes.     

Universal Algorithm for Simulating and Evaluating Cyclic Voltammetry at Macroporous Electrodes by Considering Random Arrays of Microelectrodes

An algorithm for the simulation and evaluation of cyclic voltammetry (CV) at macroporous electrodes such as felts, foams, and layered structures is presented. By considering 1D, 2D, and 3D arrays of electrode sheets, cylindrical microelectrodes, hollow-cylindrical microelectrodes, and hollow-spherical microelectrodes the internal diffusion domains of the macroporous structures are approximated. A universal algorithm providing the time-dependent surface concentrations of the electrochemically active species, required for simulating cyclic voltammetry responses of the individual planar, cylindrical, and spherical microelectrodes, is presented as well. An essential ingredient of the algorithm, which is based on Laplace integral transformation techniques, is the use of a modified Talbot contour for the inverse Laplace transformation. It is demonstrated that first-order homogeneous chemical kinetics preceding and/or following the electrochemical reaction and electrochemically active species with non-equal diffusion coefficients can be included in all diffusion models as well. The proposed theory is supported by experimental data acquired for a reference reaction, the oxidation of [Fe(CN)₆]⁴⁻ at platinum electrodes as well as for a technically relevant reaction, the oxidation of VO₂⁺ at carbon felt electrodes. Based on our calculation strategy, we provide a powerful open source tool for simulating and evaluating CV data implemented into a Python graphical user interface (GUI).     

Zeaxanthin Production by Novel Marine Isolates from Coastal sand of India and its Antioxidant Properties

Zeaxanthin carotenoids are class of commercially important natural products and diverse biomolecules produced by plants and many microorganisms. Bacteria often produce a cocktail of polar and nonpolar carotenoids limiting their industrial applications. Marine members of the family Flavobacteriaceae are known to produce potential carotenoids such as astaxanthin and zeaxanthin. A few bacterial species have been reported for the predominant production zeaxanthin. Here, we report the molecular identification of the zeaxanthin as a major carotenoid produced by two novel bacteria (YUAB-SO-11 and YUAB-SO-45) isolated from sandy beaches of South West Coast of India and the effect of carbon sources on the production of zeaxanthin. The strains were identified based on the 16S rRNA gene sequencing as a member of genus Muricauda. The closest relatives of YUAB-SO-11 and YUAB-SO-45 were Muricauda aquimarina (JCM 11811^T) (98.9 %) and Muricauda olearia (JCM 15563^T) (99.2 %), respectively, indicating that both of these strains might represent a novel species. The highest level of zeaxanthin production was achieved (YUAB-SO-11, 1.20?±?0.11 mg g^?1) and (YUAB-SO-45, 1.02?±?0.13 mg g^?1) when cultivated in marine broth supplemented with 2 % NaCl (pH 7) and incubated at 30 °C. Addition of 0.1 M glutamic acid, an intermediate of citric acid cycle, enhanced the zeaxanthin production as 18 and 14 % by the strains YUAB-SO-11 and YUAB-SO-45 respectively. The zeaxanthin showed in vitro nitric oxide scavenging, inhibition of lipid peroxidation, and 2,2-diphenyl-1-picryl hydrazyl scavenging activities higher than the commercial zeaxanthin. The results of this study suggest that two novel strains YUAB-SO-11 and YUAB-SO-45 belonging to genus Muricauda produce zeaxanthin as a predominant carotenoid, and higher production of zeaxanthin was achieved on glutamic acid supplementation. The pigment showed good in vitro antioxidant activity, which can be exploited further for commercial applications.     

$^{2}_{\infty}\rm [Tb(Tz\ast)_{3}]$, A Homoleptic 2‐Dimensional Framework from a Solvent Free Synthesis of Terbium Metal with 1H‐1,2,3‐Triazole

Single crystalline , (Tz*)^– = 1,2,3‐triazolate anion, C₂H₂N₃^–, was obtained by the reaction of terbium metal with the amine 1H‐1,2,3‐triazole. As no additional solvent was used, the formation of a homoleptic framework without additional co‐ligands is accessible. Furthermore molecular hydrogen is produced. is a 2‐dimensional framework with a (6,6) topology including (Tz*)^– double bridges. The structure can be deduced from a basic structure type as it adopts the AlCl₃ structure with the triazolate ligands establishing the package. (Tz*)^– thus function as μ‐η¹:η²/μ‐η²:η¹ linkers between trivalent terbium ions that have a C.N. of nine. The framework exhibits an exceptional thermal stability up to 380 °C considering the three neighbouring nitrogen atoms of the triazolate ligands. At this point the framework decomposes in one single exothermic step under release of N₂.     

All-photonic molecular half-adder

One molecule acts as both an AND and an XOR Boolean logic gate that share the same two photonic inputs. The molecule comprises a half-adder, adding two binary digits with only light as inputs and outputs, and consists of three covalently linked photochromic moieties, a spiropyran and two quinoline-derived dihydroindolizines. The AND function is based on the absorption properties of the molecule, whereas the XOR function is based on an off-on-off response of the fluorescence to the inputs that results from interchromophore excited-state quenching interactions. The half-adder is simple to operate and can be cycled many times.