Carbodiimide-Mediated Beckmann Rearrangement of Oxyma-B as a Side Reaction in Peptide Synthesis

The suppression of side reactions is one of the most important objectives in peptide synthesis, where highly reactive compounds are involved. Recently, the violuric acid derivative Oxyma-B was introduced into peptide synthesis protocols as a promising additive to efficiently control the optical purity of the amino acids prone to racemization. However, we discovered a side reaction involving the Beckmann rearrangement of Oxyma-B during the coupling reaction, which compromises the yield and purity of the target peptides. Here, we present the investigation of the mechanism of this rearrangement and the optimization of the coupling reaction conditions to control it. These results can be taken into account for the design of novel efficient oxime-based coupling reagents.     

Host-guest interactions at self-assembled monolayers of cyclodextrins on gold

We have developed synthesis routes for the introduction of short and long dialkylsulfides onto the primary side of alpha-, beta-, and gamma-cyclodextrins. Monolayers of these cyclodextrin adsorbates were characterized by electrochemistry, wettability studies, X-ray photoelectron spectroscopy (XPS), time-of-flight secondary ion mass spectrometry (TOF-SIMS), and atomic force microscopy (AFM). The differences in thickness and polarity of the outerface of the monolayers were measured by electro-chemistry and wettability studies. On average about 70% of the sulfide moieties were used for binding to the gold, as measured by XPS. Tof-SIMS measurements showed that the cyclodextrin adsorbates adsorb without any bond breakage. AFM measurements revealed for beta-cyclodextrin monolayers a quasi-hexagonal lattice with a lattice constant of 20.6 A, which matches the geometrical size of the adsorbate. The alpha-cyclodextrin and gamma-cyclodextrin monolayers are less ordered. Interactions of the anionic guests 1-anilinonaphthalene-8-sulfonic acid (1,8-ANS) and 2-(p-toluidinyl)naphthalene-6-sulfonic acid (2,6-TNS) and the highly ordered monolayers of heptapodant beta-cyclodextrin adsorbates were studied by surface plasmon resonance (SPR) and electrochemical impedance spectroscopy. The SPR measurements clearly showed interactions between a beta-cyclodextrin monolayer and 1,8-ANS. Electrochemical impedance spectroscopy measurements gave high responses even at low guest concentrations (< or = 5 microM). The association constant for the binding of 1,8-ANS (K = 289,000 +/- 13,000M-1) is considerably higher than the corresponding value in solution. (Partial) methylation of the secondary side of the beta-cyclodextrin strongly decreases the binding.     

Design of a simulated moving bed unit for sucrose-betaine separations

The results of a series of pulse experiments carried out in a fixed bed column packed with a strongly acid ion-exchange resin and with reference to the separation of an aqueous sucrose-betaine mixture are presented. These data were used to evaluate equilibrium and diffusion parameters for both key components in the frame of linear chromatography theory. The estimated values were used to design a simulated moving bed plant aimed to separate betaine from sucrose in beet molasses.     

Dynamics in physisorbed monolayers of 5-alkoxy-isophthalic acid derivatives at the liquid/solid interface investigated by scanning tunneling microscopy

Monolayers of isophthalic acid derivatives at the liquid/solid interface have been studied with scanning tunneling microscopy (STM). We have investigated the dynamics related to the phenomenon of solvent co-deposition, which was previously observed by our research group when using octan-1-ol or undecan-1-ol as solvents for 5-alkoxy-isophthalic acid derivatives. This solvent co-deposition has now been visualized in real-time (two frames per second) for the first time. Dynamics of individual molecules were investigated in mixtures of semi-fluorinated molecules with video-STM. The specific contrast arising from fluorine atoms in STM images allows us to use this functionality as a probe to analyze the data obtained for the mixtures under investigation. Upon imaging the same region of a monolayer for a period of time we observed that non-fluorinated molecules progressively substitute the fluorinated molecules. These findings illustrate the metastable equilibrium that exists at the liquid/solid interface, between the physisorbed molecules and the supernatant solution.     

STM imaging of a heptanuclear ruthenium(II) dendrimer, mono-add layer on graphite

Scanning tunneling microscopy (STM) and molecular mechanics calculations were used to investigate the long-range packing and the structure of an heptanuclear ruthenium (II) dendritic species, as a PF6- salt. STM imaging was carried out on a mono-add layer of the ruthenium dendrimer formed by physisorption from a 1,2,4-trichlorobenzene solution at the liquid-graphite interface. The packing of the molecules on the surface was visualised by the formation of ordered patterns and a distance of 27 +/- 2 A was measured between two adjacent lamellae. The comparison of this dimension with the molecular-modelling data indicates that the lamellae were formed by rows of dendrimer molecules in which the counterions (PF6-) were strongly associated with the Ru atoms. The images acquired with higher spatial resolution revealed the presence of repeating units within the lamellae. The comparison of the STM images with the modelling results allowed the attribution of the repeating units observed in the imaged pattern to the STM signature of single dendrimer molecules.     

Self‐diffusion of small molecules into rubbery polymers: A lattice free‐volume theory

In the framework of the free‐volume (FV) theory, a new equation was derived for the evaluation of self‐diffusion coefficients of small molecules in polymers above the mixture glass transition temperature. The derivation of the equation turned out to be straightforward once the equivalence between the free volume and the unoccupied volume given by thermodynamic lattice theories is assumed. A parameter evaluation scheme is proposed, which is substantially simpler compared with the conventional Vrentas–Duda approach, even without losing generality. The key assumption is discussed, and its consistency is verified from a numerical viewpoint. A comparison with experimental solvent self‐diffusion coefficients for several solvent/polymer binary systems confirmed that the proposed theory presents good correlative ability over wide temperature and composition ranges. Moreover, the introduced thermodynamic foundation allows one to easily include the pressure effect too. In the frame of the proposed lattice free volume theory, the sizes of the polymer jumping units decrease with temperature and increase with pressure. Such behavior converges with theoretical expectations and opens the way for a predictive FV theory. © 2010 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 529–540, 2010     

Near-critical adsorption of CO2 on 13X zeolite and N2O on silica gel: lack of evidence of critical phenomena

The excess adsorption of CO₂ on 13X zeolite and of N₂O on silica gel has been studied at high pressure using a magnetic suspension balance, i.e. a gravimetric method. Recently, a detailed study on the density distribution in the measuring cell of the magnetic suspension balance showed that a proper approach to thermostatting the unit should be used in order to obtain reliable and accurate excess adsorption measurements. This is particularly important in the vicinity of the critical point of the fluid, where the density is strongly dependent on pressure and temperature. In the past, several effects were observed in our laboratory when measuring near-critical adsorption on 13X zeolite and on silica gel, namely critical adsorption and critical depletion. In the present study, these effects have been checked using the balance in the new thermostatting configuration, and the conclusion can be drawn that the accuracy of the measurement is not sufficient to prove that they indeed occur. More accurate adsorption data for the two systems have been measured and reported.     

Quantum Chemistry: A Powerful Tool in Polymer Reaction Engineering

Summary: The potentials of computational techniques based on quantum mechanics, to support and complement the experimental analysis, are examined. Mechanisms and reaction paths involved in the free radical polymerization of widely used monomers are studied through a computational approach based on Density Functional Theory (DFT). First, the attention is focused on the initiation kinetics in order to evaluate the role of the initiators in the polymerization process. Methyl acrylate, methyl methacrylate, acrylonitrile, and styrene homopolymerization using different initiators are studied. Then, propagation kinetics is investigated. In particular, the propagation kinetic rate constants for different kinds of acrylates, methacrylates and acetates are calculated and compared with experimental data reported in the literature. The same computational approach is applied to the study of secondary reactions (backbiting, beta-scission) occurring during free radical polymerizations. Finally, the same methodologies are applied to copolymer systems, with emphasis on the evaluation of the role of penultimate effect. The copolymers vinyl acetate/methyl methacrylate and styrene/methyl methacrylate are investigated as system characterized by weak and strong penultimate effect, respectively.     

Quantum Chemical Investigation of Secondary Reactions in Poly(vinyl chloride) Free‐Radical Polymerization

Free‐radical polymerization of vinyl chloride is investigated computationally with special attention to the secondary reactions involving mid‐chain radicals (MCRs). Namely, the rate constants of backbiting, chain scission, chain transfer, and propagation reactions are evaluated using a density functional theory method. The rate coefficients of such reactions are estimated taking into account the position of the radical along the chain as well as its distance from the chain‐end. In particular 1:5, 5:1, and 5:9 backbiting are the most relevant secondary reactions, followed by the slower propagation of MCRs. Finally, a kinetic model of suspension polymerization including the investigated reactions is developed, in order to determine their impact on the quality of the final polymer.