A synthetic approach to 2,3,4-substituted pyridines useful as scaffolds for tripeptidomimetics

The synthesis of 2,3,4-substituted pyridine derivatives useful as scaffolds in the development of peptidomimetics is described. The use of a variety of electrophiles in a halogen-dance reaction to produce 3-alkyl-2-fluoro-4-iodo-pyridine derivatives as ‘functionalized scaffolds’ and the possibility to differentiate between the reactivities of the two halogen handles have been explored. Coupling of amino acid derivatives in the 4-position of the pyridine was found to proceed efficiently by conversion of iodo-pyridine to a Grignard derivative, which was allowed to react with a protected amino aldehyde. Substitution of fluorine in the 2-position of the pyridine was found to be facile with alkoxide nucleophiles, whereas amines were much less reactive.     

Effect of wet spinning parameters on the properties of novel cellulosic fibres

Novel cellulose fibres (Biocelsol) were spun by traditional wet spinning technique from the alkaline solution prepared by dissolving enzyme treated pulp directly into aqueous sodium zincate (ZnO/NaOH). The spinning dope contained 6 wt.% of cellulose, 7.8 wt.% of sodium hydroxide (NaOH) and 0.84 wt.% of zinc oxide (ZnO). The fibres were spun into 5% and 15% sulphuric acid (H₂SO₄) baths containing 10% sodium sulphate (Na₂SO₄). The highest fibre tenacity obtained was 1.8 cNdtex⁻¹ with elongation of 15% and titre of 1.4 dtex. Average molecular weights and shape of molecular weight distribution curves of the celluloses from the novel wet spun cellulosic fibre and from the commercial viscose fibre were close to each other.     

Automatic scatter detection in fluorescence landscapes by means of spherical principal component analysis

In this paper, we introduce a new method, based on spherical principal component analysis (S‐PCA), for the identification of Rayleigh and Raman scatters in fluorescence excitation–emission data. These scatters should be found and eliminated as a prestep before fitting parallel factor analysis models to the data, in order to avoid model degeneracies. The work is inspired and based on a previous research, where scatter removal was automatic (based on a robust version of PCA called ROBPCA) and required no visual data inspection but appeared to be computationally intensive. To overcome this drawback, we implement the fast S‐PCA in the scatter identification routine. Moreover, an additional pattern interpolation step that complements the method, based on robust regression, will be applied. In this way, substantial time savings are gained, and the user's engagement is restricted to a minimum, which might be beneficial for certain applications. We conclude that the subsequent parallel factor analysis models fitted to excitation–emission data after scatter identification based on either ROBPCA or S‐PCA are comparable; however, the modified method based on S‐PCA clearly outperforms the original approach in relation to computational time. Copyright © 2013 John Wiley & Sons, Ltd.     

Peracid dependent stereoselectivity and functional group contribution to the stereocontrol of epoxidation of (E)-alkene dipeptide isosteres

Twelve Boc-protected phenylalanyl-phenylalanine and phenylalanyl-glycine trans-vinyl isosteres were epoxidised with magnesium monoperoxyphtalate hexahydrate (MMPP) and trifluoroperacetic acid, and the results have been compared with those from earlier studies on epoxidations with m-CPBA. The alkenes were synthesised in high yields with high E/Z-selectivities using either the Julia or Schlosser reactions. The formation of threo isomers was favoured in all epoxidation reactions except with CF₃CO₃H on substrates containing two allylic/homoallylic functional groups directing the peracid to opposite faces of the alkene. The switch to erythro selectivity observed with CF₃CO₃H is suggested to emanate from coordination to the allylic ester functionalities via hydrogen bond donation from the peracid. The other peracid reagents seem to be preferentially coordinated to the allylic carbamate function. The contribution of individual functional groups to the stereopreference was also investigated.     

Inhibition of amyloid beta protein fibrillation by polymeric nanoparticles

Copolymeric NiPAM:BAM nanoparticles of varying hydrophobicity were found to retard fibrillation of the Alzheimer's disease-associated amyloid beta protein (Abeta). We found that these nanoparticles affect mainly the nucleation step of Abeta fibrillation. The elongation step is largely unaffected by the particles, and once the Abeta is nucleated, the fibrillation process occurs with the same rate as in the absence of nanoparticles. The extension of the lag phase for fibrillation of Abeta is strongly dependent on both the amount and surface character of the nanoparticles. Surface plasmon resonance studies show that Abeta binds to the nanoparticles and provide rate and equilibrium constants for the interaction. Numerical analysis of the kinetic data for fibrillation suggests that binding of monomeric Abeta and prefibrillar oligomers to the nanoparticles prevents fibrillation. Moreover, we find that fibrillation of Abeta initiated in the absence of nanoparticles can be reversed by addition of nanoparticles up to a particular time point before mature fibrils appear.     

Determination of OH number densities outside of a platinum catalyst using cavity ringdown spectroscopy

It is demonstrated that cavity ringdown spectroscopy (CRDS) can be used to probe reaction intermediates desorbing from the surface during a heterogeneous catalytic reaction and provide information valuable in understanding the reaction kinetics. During water formation from H2 and O2, desorbed OH molecules outside of a polycrystalline platinum catalyst were quantified as a function of the relative hydrogen concentration, alphaH2 using CRDS. The temperature of the catalyst was 1500 K, the total pressure was 26 Pa, and the flow was set to 100 sccm. At a distance of 6.5 mm from the Pt catalyst, the maximum OH concentration was found to be 1.5+/-0.2x10(12) cm(-3) at an alphaH2 value of 10%, and the rotational temperature was determined to be 775+/-24 K. The desorbed OH molecules were also probed using laser-induced fluorescence (LIF), and the alphaH2-dependent OH abundance was compared with the CRDS results. The relative concentration of OH probed with LIF appeared to be lower at alphaH2=30-50% compared to what was determined by CRDS. The observed discrepancy is suggested to be due to electronic quenching, as was indicated by a shorter fluorescence lifetime at alphaH2=30% compared to at alphaH2=10%.     

Activation of Retinoid X Receptor increases dopamine cell survival in models for Parkinson's disease

Background  

Parkinson's disease (PD) is caused by degeneration of dopamine (DA) neurons in the ventral midbrain (vMB) and results in severely disturbed regulation of movement. The disease inflicts considerable suffering for the affected and their families. Today, the opportunities for pharmacological treatment are meager and new technologies are needed. Previous studies have indicated that activation of the nuclear receptor Retinoid X Receptor (RXR) provides trophic support for DA neurons. Detailed investigations of these neurotrophic effects have been hampered by the lack of readily available DA neurons in vitro. The aim of this study was to further describe the potential neurotrophic actions of RXR ligands and, for this and future purposes, develop a suitable in vitro-platform using mouse embryonic stem cells (mESCs).     

Preparation and evaluation of sulfur-containing metal chelators

With a view to probe the structure and function of G-protein coupled receptors the synthesis of functionalized 8-mercaptoquinoline derivatives and 2-(2-pyridyl)thiophenol was achieved. A fluorescence-based method for determining the affinity of these metal chelators toward zinc ions was developed.