Deflection of laser-produced ions in laser-induced thermal-desorption/fourier-transform mass spectrometry for surface analysis

A method for deflecting ions, such as K⁺, produced outside a Fourier-transform mass spectrometer cell during laser-induced thermal desorption, is described. This technique has been shown to deflect laser-generated K and Ti ions from two Ti foil samples (biomedical implant model surfaces), yielding mass spectra of coadsorbed organic species. Further studies characterizing the laser desorption/deflection parameters have shown that ion deflection improves with higher deflection voltages and greater sample to Fourier-transform mass spectrometry cell separation. Higher laser power densities resulted in greater surface ion production; hence higher deflection voltages were necessary. A 6% increase in laser power necessitated a fourfold increase in deflection voltage for the Ti sample.     

Peptide mimotopes of phomopsins: Identification, characterization and application in an immunoassay

Peptide mimotopes of plant-associated toxins offer the potential for improving analytical and diagnostic methodologies as well as providing candidates for potential protective vaccines against plant poisoning diseases. Monoclonal antibody (mAb) C₃C₁₁, which recognizes the antimicrotubule phomopsin mycotoxins, was used to isolate peptide mimics of phomopsin A from a random 15-mer phage display peptide library. A total of 46 clones were isolated that showed specific reactivity with the mAb. Amino acid sequence analysis revealed four different types of mimotope sequences, all of which contained a common motif V-A-L/V-C. Of the 46 clones isolated, 44 contained the motif V-A-L-C while 2 contained the V-A-V-C motif. All four types of phage clones inhibited the reactivity of the mAb with phomopsin A in a competition ELISA. The clone with the mimotope sequence CT VALCNMYFGAKLD demonstrated the strongest binding. It was further shown that synthetic peptides containing these mimotope amino acid sequences were able to inhibit the mAb-phomopsin A interaction, indicating that the peptide mimotopes were responsible for the specific binding, independent of the phage framework. The results also suggest that the mimotope peptides bind to mAb C₃C₁₁ at the same site as phomopsin A. The application of recombinant phage particles carrying phomopsin mimotopes in immunoassay was evaluated and the results demonstrated approximately 100-fold increase in sensitivity in comparison with a conventional immunoassay using a chemically linked phomopsin-horseradish peroxidase conjugate.     

Hardy and BMO spaces associated to divergence form elliptic operators

Consider a second order divergence form elliptic operator L with complex bounded measurable coefficients. In general, operators based on L, such as the Riesz transform or square function, may lie beyond the scope of the Calderón–Zygmund theory. They need not be bounded in the classical Hardy, BMO and even some L ^p spaces. In this work we develop a theory of Hardy and BMO spaces associated to L, which includes, in particular, a molecular decomposition, maximal and square function characterizations, duality of Hardy and BMO spaces, and a John–Nirenberg inequality. S. Hofmann was supported by the National Science Foundation.     

Manifold Reconstruction in Arbitrary Dimensions Using Witness Complexes

It is a well-established fact that the witness complex is closely related to the restricted Delaunay triangulation in low dimensions. Specifically, it has been proved that the witness complex coincides with the restricted Delaunay triangulation on curves, and is still a subset of it on surfaces, under mild sampling conditions. In this paper, we prove that these results do not extend to higher-dimensional manifolds, even under strong sampling conditions such as uniform point density. On the positive side, we show how the sets of witnesses and landmarks can be enriched, so that the nice relations that exist between restricted Delaunay triangulation and witness complex hold on higher-dimensional manifolds as well. We derive from our structural results an algorithm that reconstructs manifolds of any arbitrary dimension or co-dimension at different scales. The algorithm combines a farthest-point refinement scheme with a vertex pumping strategy. It is very simple conceptually, and it does not require the input point sample to be sparse. Its running time is bounded by c(d)n ², where n is the size of the input point cloud, and c(d) is a constant depending solely (yet exponentially) on the dimension d of the ambient space. Although this running time makes our reconstruction algorithm rather theoretical, recent work has shown that a variant of our approach can be made tractable in arbitrary dimensions, by building upon the results of this paper. This work was done while S.Y. Oudot was a post-doctoral fellow at Stanford University. His email there is no longer valid.     

Drinfeld algebra deformations, homotopy comodules and the associahedra

The aim of this work is to construct a cohomology theory controlling the deformations of a general Drinfel'd algebra and thus finish the program which began in [13], [14]. The task is accomplished in three steps. The first step, which was taken in the aforementioned articles, is the construction of a modified cobar complex adapted to a non-coassociative comultiplication. The following two steps each involves a new, highly non-trivial, construction. The first construction, essentially combinatorial, defines a differential graded Lie algebra structure on the simplicial chain complex of the associahedra. The second construction, of a more algebraic nature, is the definition of a map of differential graded Lie algebras from the complex defined above to the algebra of derivations on the bar resolution. Using the existence of this map and the acyclicity of the associahedra we can define a so-called homotopy comodule structure (Definition 3.3 below) on the bar resolution of a general Drinfel'd algebra. This in turn allows us to define the desired cohomology theory in terms of a complex which consists, roughly speaking, of the bimodule and bicomodule maps from the bar resolution to the modified cobar resolution. The complex is bigraded but not a bicomplex as in the Gerstenhaber-Schack theory for bialgebra deformations. The new components of the coboundary operator are defined via the constructions mentioned above. The results of the paper were announced in [12].

     

On the sequence of powers of a stochastic matrix with large exponent

We consider the class of primitive stochastic n×n matrices A, whose exponent is at least (n²−2n+2)/2+2. It is known that for such an A, the associated directed graph has cycles of just two different lengths, say k and j with k>j, and that there is an α between 0 and 1 such that the characteristic polynomial of A is λⁿ−αλ^n−j−(1−α)λ^n−k. In this paper, we prove that for any mn, if α1/2, then A^m+k−A^m_∞A^m−1w^T_∞, where 1 is the all-ones vector and w^T is the left-Perron vector for A, normalized so that w^T1=1. We also prove that if jn/2, n31 and , then A^m+j−A^m_∞A^m−1w^T_∞ for all sufficiently large m. Both of these results lead to lower bounds on the rate of convergence of the sequence A^m.     

Computing inertia sets using atoms

We consider the problem of computing inertia sets for graphs. By using tools for combining the inertia sets of smaller graphs we can reduce this problem to understanding the inertia sets for three-connected graphs that are not joins. We term such graphs atoms and give the inertia sets for all atoms on at most seven vertices. This can be used to compute the inertia sets for all graphs on at most seven vertices.     

Shannon sampling II: Connections to learning theory

We continue our study [S. Smale, D.X. Zhou, Shannon sampling and function reconstruction from point values, Bull. Amer. Math. Soc. 41 (2004) 279–305] of Shannon sampling and function reconstruction. In this paper, the error analysis is improved. Then we show how our approach can be applied to learning theory: a functional analysis framework is presented; dimension independent probability estimates are given not only for the error in the L² spaces, but also for the error in the reproducing kernel Hilbert space where the learning algorithm is performed. Covering number arguments are replaced by estimates of integral operators.     

Hypothesis testing for the generalized multivariate modified Bessel model

In this paper, we consider hypothesis testing problems in which the involved samples are drawn from generalized multivariate modified Bessel populations. This is a much more general distribution that includes both the multivariate normal and multivariate-t distributions as special cases. We derive the distribution of the Hotelling's T²-statistic for both the one- and two-sample problems, as well as the distribution of the Scheffe's T²-statistic for the Behrens–Fisher problem. In all cases, the non-null distribution of the corresponding F-statistic follows a new distribution which we introduce as the non-central F-Bessel distribution. Some statistical properties of this distribution are studied. Furthermore, this distribution was utilized to perform some power calculations for tests of means for different models which are special cases of the generalized multivariate modified Bessel distribution, and the results compared with those obtained under the multivariate normal case. Under the null hypothesis, however, the non-central F-Bessel distribution reduces to the central F-distribution obtained under the classical normal model.