A Kinetic Self‐Sorting Approach to Heterocircuit [3]Rotaxanes

In this proof‐of‐concept study, an active‐template coupling is used to demonstrate a novel kinetic self‐sorting process. This process iteratively increases the yield of the target heterocircuit [3]rotaxane product at the expense of other threaded species.     

Nitrosylation of Nitric‐Oxide‐Sensing Regulatory Proteins Containing [4Fe‐4S] Clusters Gives Rise to Multiple Iron–Nitrosyl Complexes

The reaction of protein‐bound iron–sulfur (Fe‐S) clusters with nitric oxide (NO) plays key roles in NO‐mediated toxicity and signaling. Elucidation of the mechanism of the reaction of NO with DNA regulatory proteins that contain Fe‐S clusters has been hampered by a lack of information about the nature of the iron‐nitrosyl products formed. Herein, we report nuclear resonance vibrational spectroscopy (NRVS) and density functional theory (DFT) calculations that identify NO reaction products in WhiD and NsrR, regulatory proteins that use a [4Fe‐4S] cluster to sense NO. This work reveals that nitrosylation yields multiple products structurally related to Roussin's Red Ester (RRE, [Fe₂(NO)₄(Cys)₂]) and Roussin's Black Salt (RBS, [Fe₄(NO)₇S₃]. In the latter case, the absence of ³²S/³⁴S shifts in the Fe?S region of the NRVS spectra suggest that a new species, Roussin's Black Ester (RBE), may be formed, in which one or more of the sulfide ligands is replaced by Cys thiolates.     

Rotationally Active Ligands: Dialing‐Up the Co‐conformations of a [2]Rotaxane for Metal Ion Binding

A novel [2]rotaxane was constructed that has a bidentate N,N′‐chelate as part of a rigid, H‐shaped axle and a 24‐membered crown ether macrocycle containing six ether O‐atoms and an olefinic group as the wheel. This unique topology produces a ligand with the ability to dial‐up different donor sets for complexation to metal ions by simply rotating the wheel about the axle. The solution and solid‐state structures of the free ligand and complexes with Li⁺ and Cu⁺ show how the ligand adopts different rotational co‐conformations for each. The Li⁺ ion uses the N,N′‐chelate and O‐donors while the Cu⁺ center is coordinated to both O‐donors and the olefinic group. This concept of rotationally active ligands should be possible with a wide variety of donor sets and could find broad application in areas of coordination chemistry, such as catalysis and metal sequestration.     

Nickel(II) complexes bearing pyrazolylpyridines: synthesis,structures and ethylene oligomerization reactions

Reactions of 2‐bromo‐6‐(3,5‐dimethyl‐1H‐pyrazol‐1‐yl)pyridine ( L1 ) and 2,6‐bis(3,5‐dimethyl‐1H‐pyrazol‐1‐yl)pyridine ( L2 ) with NiCl₂ and NiBr₂ led to the formation of their respective metal complexes [NiCl₂(L1)] ( 1 ), [NiBr₂(L1)] ( 2 ) and [NiBr₂(L2)] ( 3 ) in moderate to high yields. The complexes were characterized using elemental analyses, mass spectrometry and single‐crystal X‐ray diffraction for 2 . The solid‐state structure of 2 confirmed the bidentate coordination mode of L1 and formation of a monometallic compound. Activation of the nickel(II) pre‐catalysts with methylaluminoxane afforded active catalysts in the ethylene oligomerization reaction to produce mainly butenes (84–86%). In contrast, activation of nickel(II) pre‐catalyst 2 with ethylaluminium dichloride resulted in partial Friedel–Crafts alkylation of the toluene solvent by the preformed oligomers. Complex structure, nature of co‐catalyst employed, type of solvent and reaction conditions influenced the catalytic behaviour of these pre‐catalysts. Copyright © 2015 John Wiley & Sons, Ltd.     

Regioselective Amine–Borane Cyclization: Towards the Synthesis of 1,2‐BN‐3‐Cyclohexene by Copper‐Assisted Triazole/Gold Catalysis

The combination of triazole/gold (TA‐Au) and Cu(OTf)₂ is identified as the optimal catalytic system for promoting intramolecular hydroboration for the synthesis of a six‐membered cyclic amine–borane. Excellent yields (up to 95 %) and regioselectivities (5‐exo vs. 6‐endo) were achieved through catalyst control and sequential dilution. Good functional‐group tolerance was attained, thus allowing the preparation of highly functionalized cyclic amine–borane substrates, which could not be achieved using other methods. Deuterium‐labeling studies support the involvement of a hydride addition to a gold‐activated alkyne with subsequent C?B bond formation.     

Gold catalysis contra platinum catalysis in hydroarylation contra phenol synthesis

Three silylated γ-alkynylfurans were prepared and subjected to both gold and platinum catalysts. The TMS- and the TBDMS-substituted furans reacted. With AuCl₃ and the binuclear [(Ph₃PAu)₂Cl][BF₄] catalyst a hydroarylation of the alkyne was observed. Na[AuCl₄] gave phenols as the product, but these were formed only after in situ desilylation of the starting material by the gold catalyst and thus the wrong isomer dominated. Only with PtCl₂(MeCN)₂ phenols with a silyl group were formed. The TBDPS-substituted furan failed to react. Two alkynylsilanes were synthesized, but they also failed to react.     

Direct detection of polyynes formation from the reaction of ethynyl radical (C2H) with propyne (CH3-C[triple bond]CH) and allene (CH2=C=CH2)

The reactions of the ethynyl radical (C(2)H) with propyne and allene are studied at room temperature using an apparatus that combines the tunability of the vacuum ultraviolet radiation of the Advanced Light Source at Lawrence Berkeley National Laboratory with time-resolved mass spectrometry. The C(2)H radical is prepared by 193-nm photolysis of CF(3)CCH and the mass spectrum of the reacting mixture is monitored in time using synchrotron-photoionization with a dual-sector mass spectrometer. Analysis using photoionization efficiency curves allows the isomer-specific detection of individual polyynes of chemical formula C(5)H(4) produced by both reactions. The product branching ratios are estimated for each isomer. The reaction of propyne with ethynyl gives 50-70% diacetylene (H-C[triple bond]C-C[triple bond]C-H) and 50-30% C(5)H(4), with a C(5)H(4)-isomer distribution of 15-20% ethynylallene (CH(2)=C=CH-C[triple bond]CH) and 85-80% methyldiacetylene (CH(3)-C[triple bond]C-C[triple bond]CH). The reaction of allene with ethynyl gives 35-45% ethynylallene, 20-25% methyldiacetylene and 45-30% 1,4-pentadiyne (HC[triple bond]C-CH(2)-C[triple bond]CH). Diacetylene is most likely not produced by this reaction; an upper limit of 30% on the branching fraction to diacetylene can be derived from the present experiment. The mechanisms of polyynes formation by these reactions as well as the implications for Titan's atmospheric chemistry are discussed.     

Fast 3D shape screening of large chemical databases through alignment-recycling

Background  

Large chemical databases require fast, efficient, and simple ways of looking for similar structures. Although such tasks are now fairly well resolved for graph-based similarity queries, they remain an issue for 3D approaches, particularly for those based on 3D shape overlays. Inspired by a recent technique developed to compare molecular shapes, we designed a hybrid methodology, alignment-recycling, that enables efficient retrieval and alignment of structures with similar 3D shapes.     

Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold

Stimulation of the PI3K/Akt/mTOR pathway, which controls cell proliferation and growth, is often observed in cancer cell. Inhibiting both PI3K and mTOR in this pathway can switch off Akt activation and hence, plays a powerful role for modulating this pathway. PKI-587, a drug containing the structure of morpholino-triazines, shows a dual and nano-molar inhibition activity and is currently in clinical trial. To provide an insight into the mechanism of this dual inhibition, pharmacophore and QSAR models were developed in this work using compounds based on the morpholino-triazines scaffold, followed by a docking study. Pharmacophore model suggested the mechanism of the inhibition of PI3Kα and mTOR by the compounds were mostly the same, which was supported by the docking study showing similar docking modes. The analysis also suggested the importance of the flat plane shape of the ligands, the space surrounding the ligands in the binding pocket, and the slight difference in the shape of the binding sites between PI3Kα and mTOR.