Study of chain branching in natural rubber using size-exclusion chromatography coupled with a multi-angle light scattering detector (SEC-MALS)

The different rheological behaviour of natural rubber (NR) compared to industrial synthetic poly(cis-1,4-isoprene) (SR) has been attributed to the gel phase and long-chain branching. Previous studies on branching in NR were carried out using the fractionation technique by precipitation to obtain narrow molar mass distribution. In this study, chain branching of poly(cis-1,4-isoprene) in NR was characterised by size-exclusion chromatography coupled with an online multi-angle light scattering detector (SEC-MALS). The nanoaggregates adsorbed on the column packing interfered with branching characterisation for short and medium chains (M_w < 1000 kg/mol). Using a master curve of linear standard poly(cis-1,4-isoprenes), SEC-MALS revealed no or very little branching in the higher chains (1000 < M_w < 10,000 kg/mol) of natural rubber contrary to previous studies. This study showed that the soluble portion of NR samples was composed of almost linear poly(cis-1,4-isoprene) and nanoaggregates with rather compact structures.     

Furanoside phosphite–phosphoroamidite and diphosphoroamidite ligands for Cu-catalyzed asymmetric 1,4-addition reactions

A sugar-based phosphite–phosphoroamidite and diphosphoroamidite ligand library L1–L5a–g was tested in the asymmetric Cu-catalyzed 1,4-conjugate addition reactions of β-substituted and β,β′-disubstituted enones. Our results indicated that the selectivity was strongly dependent on the ligand parameters and on the substrate structure. Moderate-to-good enantioselectivities (ees up to 84%) were obtained in the 1,4-addition of several types of β-substituted cyclic and linear substrates. Of particular note is the high enantioselectivity (ees up to 90%) obtained for the more challenging β,β′-disubstituted 3-methyl-cyclohexenone.     

Cooperative recognition of Cu<Superscript>2+</Superscript> based on amino acids tethered benzothiadiazoyl-bistriazoles

Fluoroionophoric properties of benzothiadiazoyl-bistriazoyl amino acids derivatives toward metal ions were investigated by UV-Vis and fluorescence spectroscopy. Our results show that the watersoluble lysine derivative 2 exhibited a significant selectivity toward Cu²⁺ in “on-off” type response in buffer solution at pH 7.4.     

Fine-tunable monodentate phosphoroamidite and aminophosphine ligands for Rh-catalyzed asymmetric hydroformylation

A biaryl-based monophosphoroamidite L1–L4a–f and aminophosphine L5–L7a–f ligand library was screened in the Rh-catalyzed asymmetric hydroformylation of several vinylarenes and heterocyclic olefins. Our results indicate that the selectivity is strongly dependent on the ligand parameters and on the substrate type. Enantioselectivities (up to 46%) were moderate in the hydroformylation of several vinylarenes S1–S5 and promising (up to 58%) for the more challenging heterocyclic olefins S6–S9.     

Parametric processes in microstructured and highly nonlinear optical fibres

Optical parametric amplification is an important nonlinear process in photonic crystal fibres driven by the small effective area and the special dispersion characteristics of these fibres. Aside from its role in supercontinuum generation, parametric amplification can lead to efficient wavelength conversion, limited primarily by the uniformity of the diameter of currently available fibres. The related Bragg scattering process can be used for both wavelength conversion and optical switching, again limited by the physical characteristics of the fibres used.     

Advantages of Adaptive Speckle Filtering Prior to Application of Iterative Deconvolution Methods for Optical Coherent Tomography Imaging

The axial resolution of optical coherence tomography (OCT) is closely related to the light source spectrum width. Unfortunately, most basic sources providing the required power for decent OCT image have narrow spectra, which generate a resolution loss. Assuming the OCT system is linear shift-invariant, we can consider the system output as the convolution of the theoretical signal with a system impulse response due to this spectrum narrowness. It becomes then possible to enhance this resolution through iterative deconvolution methods (IDM). However those methods have a significant drawback, as they usually significantly enhance speckle, which is another consequence of the source spectrum narrowness. To compensate this, we rely on preliminary speckle filtering, and especially the adaptative ones, which allow tackling the speckle without blurring the image. We first studied enhancement proposed by most popular IDMs on OCT images, and then the effect of preliminary adaptive speckle filtering (ASF) by different common adaptive methods. Then, among those methods, we combined Frost filter and Richardson-Lucy deconvolution in the appropriated way; this way we both enhanced resolution by 2 and reduced speckle (raising CNR from 0.7 to 1.3)     

A comparison of neighbor search algorithms for large rigid molecules

Fast determination of neighboring atoms is an essential step in molecular dynamics simulations or Monte Carlo computations, and there exists a variety of algorithms to efficiently compute neighbor lists. However, most of these algorithms are general, and not specifically designed for a given type of application. As a result, although their average performance is satisfactory, they might be inappropriate in some specific application domains. In this article, we study the case of detecting neighbors between large rigid molecules, which has applications in, e.g., rigid body molecular docking, Monte Carlo simulations of molecular self-assembly or diffusion, and rigid body molecular dynamics simulations. More precisely, we compare the traditional grid-based algorithm to a series of hierarchy-based algorithms that use bounding volumes to rapidly eliminate large groups of irrelevant pairs of atoms during the neighbor search. We compare the performance of these algorithms based on several parameters: the size of the molecules, the average distance between them, the cutoff distance, as well as the type of bounding volume used in the culling hierarchy (AABB, OBB, wrapped, or layered spheres). We demonstrate that for relatively large systems (> 100,000 atoms) the algorithm based on the hierarchy of wrapped spheres shows the best results and the traditional grid-based algorithm gives the worst timings. For small systems, however, the grid-based algorithm and the one based on the wrapped sphere hierarchy are beneficial.     

Specific detection of Campylobacter jejuni using the bacteriophage NCTC 12673 receptor binding protein as a probe

Campylobacter jejuni is found in the intestines of poultry, cattle, swine, wild birds and pet animals and is the major cause of foodborne gastroenteritis in developed countries. We report the use of the receptor binding protein (RBP) of Campylobacter bacteriophage NCTC 12673 for the specific capture of Campylobacter jejuni bacteria using RBP-derivatized capturing surfaces. The Gp48 RBP was expressed as a glutathione S-transferase-Gp48 (GST-Gp48) fusion protein and immobilized onto surface plasmon resonance (SPR) surfaces using glutathione self-assembled monolayers (GSH SAM). Bovine serum albumin (BSA) was used to block any non-specific binding. Glutathione SAM leads to an oriented attachment of the protein, resulting in a two- to three-fold improvement of bacterial capture when compared to dithiobis(succinimidyl propionate) (DTSP) SAM-based unoriented attachment. The specificity of recognition was confirmed using Salmonella enterica subsp. enterica serovar Typhimurium as a negative control, which indeed showed negligible binding. The detection limit of the RBP-derivatized SPR surfaces was found to be 10(2) cfu/ml. Finally, GST-Gp48 was also immobilized onto magnetic beads that were successfully used to capture and pre-concentrate the host pathogen from suspension.