Study of the oligopeptide fraction in Grana Padano and Parmigiano-Reggiano cheeses by liquid chromatography electrospray ionization mass spectrometry

The oligopeptide fractions of Grana Padano and Parmigiano Reggiano cheese samples, at various stages of ageing (6, 12, 18 and 24 months), were analysed by means of high-performance liquid chromatography coupled to electrospray ionisation mass spectrometry (ESI-MS). The main oligopeptides (< 5000 Da) present in the samples were extracted by using an originally developed method which allowed good enrichment of the oligopeptide fractions and identified according to their molecular weights. The casein sequences compatible with the found molecular weights were determined and the exact oligopeptide sequences were identified by using the fragmentation peaks originated by in-source collisionally-induced dissociation (CID). The ESI-MS method reported here allowed the sequence identification of oligopeptides very quickly with a single liquid chromatography-mass spectrometry run. Oligopeptides were also semi-quantified by comparison with a suitable internal standard (the dipeptide phenylalanyl-phenylalanine, Phe-Phe). This methodology demonstrated that, as far as the main oligopeptides are concerned, Grana Padano and Parmigiano Reggiano presented very similar composition. Anyway, the evolution of the fractions during ageing time was characteristically distinct among the two cheeses: in Grana Padano cheeses most of the oligopeptides reached a maximum at 12 months of ageing and then decreased, whereas in Parmigiano Reggiano cheeses the oligopeptide amounts were usually lower and had a less regular trend. The reason for this different behaviour may be ascribed to the different production techniques.     

The simple geometry of perfect information games

Perfect information games have a particularly simple structure of equilibria in the associated normal form. For generic such games each of the finitely many connected components of Nash equilibria is contractible. For every perfect information game there is a unique connected and contractible component of subgame perfect equilibria. Finally, the graph of the subgame perfect equilibrium correspondence, after a very mild deformation, looks like the space of perfect information extensive form games.     

An approach to infinitary temporal proof theory

Aim of this work is to investigate from a proof-theoretic viewpoint a propositional and a predicate sequent calculus with an –type schema of inference that naturally interpret the propositional and the predicate until–free fragments of Linear Time Logic LTL respectively. The two calculi are based on a natural extension of ordinary sequents and of standard modal rules. We examine the pure propositional case (no extralogical axioms), the propositional and the first order predicate cases (both with a possibly infinite set of extralogical axioms). For each system we provide a syntactic proof of cut elimination and a proof of completeness.Supported by MIUR COFIN 02 Teoria dei Modelli e Teoria degli Insiemi, loro interazioni ed applicazioni.Supported by MIUR COFIN 02 PROTOCOLLO.Mathematics Subject Classification (2000):03B22, 03B45, 03F05     

Equilibrium cluster phases and low-density arrested disordered states: the role of short-range attraction and long-range repulsion

We study a model in which particles interact with short-ranged attractive and long-ranged repulsive interactions, in an attempt to model the equilibrium cluster phase recently discovered in sterically stabilized colloidal systems in the presence of depletion interactions. At low packing fractions, particles form stable equilibrium clusters which act as building blocks of a cluster fluid. We study the possibility that cluster fluids generate a low-density disordered arrested phase, a gel, via a glass transition driven by the repulsive interaction. In this model the gel formation is formally described with the same physics of the glass formation.     

Solitonic all-optical switch based on the fractional Talbot effect

A periodic pattern of hundreds of beams is shifted by half its transverse period as the result of excitation of parametric spatial solitons and the fractional Talbot effect. The all-optical switch that is obtained operates with 1-ps pulses.     

Nonconservative earthquake model of self-organized criticality on a random graph

We numerically investigate the Olami-Feder-Christensen model on a quenched random graph. Contrary to the case of annealed random neighbors, we find that the quenched model exhibits self-organized criticality deep within the nonconservative regime. The probability distribution for avalanche size obeys finite size scaling, with universal critical exponents. In addition, a power law relation between the size and the duration of an avalanche exists. We propose that this may represent the correct mean-field limit of the model rather than the annealed random neighbor version.     

Truncation of power law behavior in "scale-free" network models due to information filtering

We formulate a general model for the growth of scale-free networks under filtering information conditions-that is, when the nodes can process information about only a subset of the existing nodes in the network. We find that the distribution of the number of incoming links to a node follows a universal scaling form, i.e., that it decays as a power law with an exponential truncation controlled not only by the system size but also by a feature not previously considered, the subset of the network "accessible" to the node. We test our model with empirical data for the World Wide Web and find agreement.     

Photoinhibition in vivo and in vitro involves weakly coupled chlorophyll-protein complexes

In the present study the analysis of the relation between the excited state population in the photosystem II (PSII) antenna and photoinactivation has been extended from an in vitro system, isolated thylakoids, to an in vivo system, Chlamydomonas reinhardtii cells. The results indicate that the excited state quenching by an added singlet quencher induces maximal protection against photoinhibition of about 30% of that expected on the basis of the observed light intensity-treatment time reciprocity rule. Similar results, obtained previously with thylakoids, have been interpreted in terms of damaged or incorrectly assembled complexes that play an important role in photoinhibition in the thylakoid membranes (Santabarbara, S., K. Neverov, F. M. Garlaschi, G. Zucchelli and R. C. Jennings [2001] Involvement of uncoupled antenna chlorophylls in photoinhibition in thylakoids. FEBS Lett. 491, 109-113.). In an attempt to better define this aspect, the photoinhibition action spectra were determined for mutant barley thylakoids, lacking the chlorophyll (Chl) a-b complexes of the outer antenna, and for its wild type. The results indicate that in both systems the action spectra are significantly blueshifted (2-4 nm) and are broader than the PSII absorption in the membranes. These data are interpreted in terms of a heterogeneous population of outer and inner antenna pigment-protein complexes that contain significant levels of uncoupled Chl.     

New insights into the mechanism of purple acid phosphatase through (1)H NMR spectroscopy of the recombinant human enzyme

Proton NMR spectra of FeIII-FeII recombinant single polypeptide human PAP (recHPAP) have been measured at, above, and below its pH optimum, as have the spectra of inhibited forms containing fluoride and phosphate, analogues of the substrates hydroxide and phosphate esters, respectively. The results demonstrate that binding of inhibitory anions to the dinuclear mixed-valent site of recHPAP is controlled by protonation of a ligand to the dinuclear center. Thus, the group that is responsible for pKa,1 in the enzymatic activity versus pH profile functions as a "gatekeeper", whose protonation state controls anion binding to the mixed-valent dinuclear site. The correlation between the pKa values observed in kinetics studies and for the spectroscopic changes strongly suggests that this group is the nucleophilic hydroxide that attacks the phosphate ester substrate.     

Finite Element Matrix Sequences: the Case of Rectangular Domains

In the present paper, we consider a preconditioning strategy for Finite Element (FE) matrix sequences {A _n (a)} _n discretizing the elliptic problem $$\left\{ \begin{gathered} A_a u \equiv ( - )^k \nabla ^k [a(x,y)\nabla ^k u(x,y)] = f(x,y),{ }(x,y) \in \Omega = (0,1)^2 , \hfill \\ \left. {\left( {\frac{{\partial ^s }}{{\partial v^s }}u(x,y)} \right)} \right|_{\partial \Omega } \equiv 0,{ }s = 0,...,k - 1,{ }^{^{^{^{^{^{(1)} } } } } } \hfill \\ \end{gathered} \right.$$ with a(x,y) being a uniformly positive function and ν denoting the unit outward normal direction. More precisely, in connection with preconditioned conjugate gradient (PCG) like methods, we define the preconditioning sequence: {P _n (a)} _n , P _n (a):= $$\widetilde D$$ _n ^1/2(a)A _n (1) $$\widetilde D$$ _n ^1/2(a), where $$\widetilde D$$ _n (a) is the suitable scaled main diagonal of A _n (a). In fact, under the mild assumption of Lebesgue integrability of a(x), the weak clustering at the unity of the corresponding preconditioned sequence is proved. Moreover, if a(x,y) is regular enough and if a uniform triangulation is considered, then the preconditioned sequence shows a strong clustering at the unity so that the sequence {P _n (a)} _n turns out to be a superlinear preconditioning sequence for {A _n (a)} _n . The computational interest is due to the fact that the computation with A _n (a) is reduced to computations involving diagonals and two-level Toeplitz structures {A _n (1)} _n with banded pattern. Some numerical experimentations confirm the efficiency of the discussed proposal.