Demystifying the three dimensional structure of G protein-coupled receptors (GPCRs) with the aid of molecular modeling

We review our recent work on adenosine receptors, a family of GPCRs; focusing our attention on A3 adenosine receptor, we have demonstrated that the reciprocal integration of different theoretical and experimental disciplines can be very useful for the successful protein-based design of new, potent and selective receptor ligands.     

A phosphorus supported multisite coordinating tris hydrazone P(S)[N(Me)N=CH-C6H4-o-OH]3 as an efficient ligand for the assembly of trinuclear metal complexes: synthesis, structure, and magnetism

A phosphorus supported multisite coordinating ligand P(S)[N(Me)N=CH-C(6)H(4)-o-OH](3) (2) was prepared by the condensation of the phosphorus tris hydrazide P(S)[N(Me)NH(2)](3) (1) with o-hydroxybenzaldehyde. The reaction of 2 with M(OAc)(2).xH(2)O (M = Mn, Co, Ni, x = 4; M = Zn, x = 2) afforded neutral trinuclear complexes [P(S)[N(Me)N=CH-C(6)H(4)-o-O](3)](2)M(3) [M = Mn (3), Co (4), Ni (5), and Zn (6)]. The X-ray crystal structures of compounds 2-6 have been determined. The structures of 3-6 reveal that the trinculear metal assemblies are nearly linear. The two terminal metal ions in a given assembly have an N(3)O(3) ligand environment in a distorted octahedral geometry while the central metal ion has an O(6) ligand environment also in a slightly distorted octahedral geometry. In all the complexes, ligand 2 coordinates to the metal ions through three imino nitrogens and three phenolate oxygens; the latter act as bridging ligands to connect the terminal and central metal ions. The compounds 2-6 also show intermolecular C-H...S=P contacts in the solid-state which lead to the formation of polymeric supramolecular architectures. The observed magnetic data for the (s = 5/2)3 L(2)(Mn(II))(3) derivative, 3, show an antiferromagnetic nearest- and next-nearest-neighbor exchange (J = -4.0 K and J' = -0.15 K; using the spin Hamiltonian H(HDvV) = -2J(S(1)S(2) + S(2)S(3)) - 2J'S(1)S(3)). In contrast, the (s = 1)(3) L(2)(Ni(II))(3) derivative, 5, displays ferromagnetic nearest-neighbor and antiferromagnetic next-nearest-neighbor exchange interactions (J = 4.43 K and J' = -0.28 K; H = H(HDvV)+ S(1)DS(1) + S(2)DS(2)+ S(3)DS(3)). The magnetic behavior of the L(2)(Co(II))(3) derivative, 4, reveals only antiferromagnetic exchange analogous to 3 (J = -4.5, J' = -1.4; same Hamiltonian as for 3).     

Ditocopheryl Sulfides and Disulfides: Synthesis and Antioxidant Profile

Symmetrical ditocopheryl disulfides ( Toc ) ₂ S₂ and symmetrical and unsymmetrical ditocopheryl sulfides ( Toc )₂ S were simply prepared under remarkably mild conditions with complete control of the regiochemistry by using δ-, γ-, and β-tocopheryl-N-thiophthalimides ( Toc-NSPht ) as common starting materials. The roles of sulfur atom(s), H-bond and aryl ring substitution pattern on the antioxidant profile of these new compounds, which were assembled by linking together two tocopheryl units, are also discussed.     

Regioselective N‐Alkylation of Ethyl 4‐Benzyloxy‐1,2,3‐triazolecarboxylate: A Useful Tool for the Synthesis of Carboxylic Acid Bioisosteres

Acidic 4‐hydroxy‐1,2,3‐triazole is a proven bioisostere of acidic functions that has recently been used to replace the acidic moieties of biologically active leads. Straightforward chemical strategies for the synthesis of the three possible N‐alkylated 4‐hydroxy‐1,2,3‐triazole regioisomers have been designed and reported herein, by identifying the optimal conditions under which the alkylation of ethyl 4‐benzyloxy‐1,2,3‐triazolecarboxylate (compound 19 ) can be regiodirected to the triazole N(b) position and thus produce the only isomer that cannot be obtained via the cycloaddition reaction. Furthermore, an innovative platform for parallel synthesis, called Arachno and which has been patented by the authors' group, has been used to speed up the process, and an NMR study has been carried out to better understand the reactivity of compound 19 towards the N(b) position. A library of benzyloxy protected 4‐hydroxy‐1,2,3‐triazoles has been prepared using the two strategies: regiodirection for the N(b) and N(c) isomers and cycloaddition for the N(a) isomers; the processes are described herein. The three N‐alkylated regioisomer series have been characterized spectroscopically (NMR and MS). The subsequent catalytic hydrogenation of the 4‐benzyloxy protective group on the N‐alkylated‐4‐benzyloxy‐5‐ethoxycarbonyl‐1,2,3‐triazoles provided the corresponding substituted 4‐hydroxy‐1,2,3‐triazoles.     

A convenient procedure for the synthesis of tetrathia-[7]-helicene and the selective α-functionalisation of terminal thiophene ring

This paper describes a convenient preparation of tetrathia-[7]-helicene (TH[7]), the generation of the α-anion on the terminal thiophene ring, and the synthesis of the 2-formyl-tetrathia-[7]-helicene (2-CHO-TH[7]). The key intermediate trans-1,2-dibenzodithiophene-ethene, prepared in 97% yield by McMurry coupling of the 2-formyl-benzo[1,2-b;4,3-b′]dithiophene, was transformed into TH[7] using a known procedure. The described method affords TH[7] in 46% overall yield, which is more than four times the yield previously reported in the literature. The α-anion of TH[7], which is easily generated on the α-position of one of the terminal thiophene rings, reacts with electrophilic reagents such as D₂O and DMF. The latter reaction proved to be the best way to prepare 2-CHO-TH[7], a key intermediate for the preparation of new substituted heterohelicenes.     

Synthesis of Ni–Ru Alloy Nanoparticles and Their High Catalytic Activity in Dehydrogenation of Ammonia Borane

We report the synthesis and characterization of new Ni_xRu_1?x (x=0.56–0.74) alloy nanoparticles (NPs) and their catalytic activity for hydrogen release in the ammonia borane hydrolysis process. The alloy NPs were obtained by wet‐chemistry method using a rapid lithium triethylborohydride reduction of Ni²⁺ and Ru³⁺ precursors in oleylamine. The nature of each alloy sample was fully characterized by TEM, XRD, energy dispersive X‐ray spectroscopy (EDX), and X‐ray photoelectron spectroscopy (XPS). We found that the as‐prepared Ni–Ru alloy NPs exhibited exceptional catalytic activity for the ammonia borane hydrolysis reaction for hydrogen release. All Ni–Ru alloy NPs, and in particular the Ni_0.74Ru_0.26 sample, outperform the activity of similar size monometallic Ni and Ru NPs, and even of Ni@Ru core‐shell NPs. The hydrolysis activation energy for the Ni_0.74Ru_0.26 alloy catalyst was measured to be approximately 37 kJ mol^?1. This value is considerably lower than the values measured for monometallic Ni (≈70 kJ mol^?1) and Ru NPs (≈49 kJ mol^?1), and for Ni@Ru (≈44 kJ mol^?1), and is also lower than the values of most noble‐metal‐containing bimetallic NPs reported in the literature. Thus, a remarkable improvement of catalytic activity of Ru in the dehydrogenation of ammonia borane was obtained by alloying Ru with a Ni, which is a relatively cheap metal.     

Preparation and Reactivity of Mixed‐Ligands Hydride Complexes [RuHCl(CO)(PPh3)2{P(OR)3}]

Mixed‐ligands hydride complexes [RuHCl(CO)(PPh₃)₂{P(OR)₃}] ( 2 ) (R = Me, Et) were prepared by allowing [RuHCl(CO)(PPh₃)₃] ( 1 ) to react with an excess of phosphites P(OR)₃ in refluxing benzene. Treatment of hydrides 2 first with triflic acid and next with an excess of hydrazine afforded hydrazine complexes [RuCl(CO)(κ¹‐NH₂NHR1)(PPh₃)₂{P(OR)₃}]BPh₄ ( 3 , 4 ) (R1 = H, CH₃). Diethylcyanamide derivatives [RuCl(CO)(N≡CNEt₂)(PPh₃)₂{P(OR)₃}]BPh₄ ( 5 ) were also prepared by reacting 2 first with HOTf and then with N≡CNEt₂. The complexes were characterized spectroscopically and by X‐ray crystal structure determination of [RuHCl(CO)(PPh₃)₂{P(OEt)₃}] ( 2b ).     

Hollow ruthenium nanoparticles with small dimensions derived from Ni@Ru core@shell structure: synthesis and enhanced catalytic dehydrogenation of ammonia borane

Hollow Ru nanoparticles with ~14 nm diameter and ~2 nm shell thickness are reported for the first time, by removal of Ni from the delicately designed Ni@Ru core@shell NPs. Such hollow Ru NPs exhibit enhanced catalytic activity in the dehydrogenation of ammonia borane with respect to solid ones.     

Analysis of normal and modified nucleosides in urine by capillary electrophoresisa)

Summary Modified nucleosides excreted in urine have been studied as potential diagnostic markers for cancer and AIDS, and as indicators for the whole-body turnover of RNA. Until now, reversed-phase (RP) HPLC and, to some extent, immunoassays are the preferred analytical methods for urinary nucleosides. A new capillary electrophoretic method for the analysis of normal and modified nucleosides in urine has been developed and optimized in our laboratory. The separation of nucleosides extracted from normal human urine on phenyl boronic acid affinity chromatography columns was performed in uncoated 565 mm (500 mm to detection window) × 50 μm i.d. capillary tubing using a 300 mM SDS—25 mM borate—50 mM phosphate buffer (pH 6.7), a 45-s load, a voltage of 7.5 kV (41 μA) and UV detection at 260 and 210 nm. The average recovery of the nucleosides was 91 %. The calibration curves were linear over all physiological and pathophysiological concentration ranges and the limits of detection were at micromolar levels. Reproducibility of migration times were better than 1 % (coefficient of variation,CV), and the reproducibilities of the determined concentrations were better than 5 % for standards and 6–15 % for extracted urine. The developed method was used to quantify 15 normal and modified nucleosides in 25 normal urines to establish reference ranges. The analysis time was less than 45 min. Dedicated to Professor E. Bayer on the occasion of his 70th birthday. Presented at the 21^st ISC held in Stuttgart, Germany, 15^th–20^th September, 1996.