Kinetics of acid-induced spectral changes in the GFPmut2 chromophore

We have used a nanosecond pH-jump technique, coupled with simultaneous transient absorption and fluorescence emission detection, to characterize the dynamics of the acid-induced spectral changes in the GFPmut2 chromophore. Disappearance of the absorbance at 488 nm and the green fluorescence emission occurs with a thermally activated, double exponential relaxation. To understand the source of the two transients we have introduced mutations in amino acid residues that interact with the chromophore (H148G, T203V, and E222Q). Results indicate that the faster transient is associated with proton binding from the solution, while the second process, smaller in amplitude, is attributed to structural rearrangement of the amino acids surrounding the chromophore. The protonation rate shows a 3-fold increase for the H148G mutant, demonstrating that His148 plays a key role in protecting the chromophore from the solvent. The deprotonation rate for T203V is an order of magnitude smaller, showing that the hydrogen bond with the hydroxyl of Thr203 is important in stabilizing the deprotonated form of the chromophore. A kinetic model suggests that, in addition to protecting the chromophore from the solvent, His148 may act as the primary acceptor for the protons on the way to the chromophore.     

Surface Tension, Heat Capacity, and Volume of Amphiphilic Compounds in Formamide Solutions

Density measurements of sodium dodecyl sulfate (SDS), sodium decyl sulfate (SDeS), sodium octyl sulfate(SOS), and sodium hexyl sulfate(SHS) in formamide (FA) as functions of the surfactant concentrations were carried out at 25°C. For SDS in FA, additional density measurements at 35 and 60°C and surface tension and specific heat capacity measurements at 25°C were also performed. From density and specific heat capacity data, the apparent molar volume and heat capacity of the surfactants as functions of concentration were calculated. The surface excess of SDS at the solution–air interface was also determined from the surface tension measurements using the Gibbs adsorption equation. Under our experimental conditions, none of the experimental results evidence micelle formation. In addition, volumetric studies of the hexanol–SDS–FA ternary system at 25°C evidence only interactions between the dispersed surfactant and alcohol.     

Determination of Arsenic Speciation in Complex Environmental Samples by the Combined Use of TEM and XPS

Transmission Electron Microscopy (TEM) and X-ray Photoelectron Spectroscopy (XPS) have been used to refine the solid-state speciation of As in mine waste materials and stream-bed sediments from the Baccu Locci mine area in Sardinia, Italy. The combined use of TEM and XPS confirmed previous studies and pointed out that: (i) As is contained in plumbojarosite in substitution of S, (ii) As-bearing Fe(III) hydroxides are represented by arsenical 2-line ferrihydrites with most Fe/As molar ratios in the range of 1.6–3.2, (iii) scorodite often lacks long range order. Arsenatian plumbojarosite will tend to dissolve incongruently in ferrihydrite, releasing Pb and As into water. However, Pb is fated to precipitate as Pb(OH)₂ or to be adsorbed onto ferrihydrite, whereas As mobility is favoured since the adsorptive capacity of ferrihydrite for As(V) is notably reduced under the neutral to alkaline pH conditions occurring in the Baccu Locci stream water. Arsenical ferrihydrites will tend to be converted into goethite or hematite with time, releasing As into the water as a consequence of the notably lower density of the adsorption sites of the crystalline Fe(III) phases. Also scorodite is relatively unstable under the Baccu Locci system conditions, and its stability is further decreased owing to the higher solubility of the amorphous form compared to the crystalline one.     

The methylation,oxidation and crystallographic characterization of imidazole derivatives

Compounds 2, 3 and 4 were synthesized and the crystal and molecular structures of 1 and 4 were determined. An hptlc technique for studying the methylation rate of 1 and the oxidation rate of 2 was applied.     

Two-step elution of human serum proteins from different glass-modified bioactive surfaces: a comparative proteomic analysis of adsorption patterns

Plasma protein adsorption patterns on surfaces may give vital information to evaluate biocompatibility of biomaterials designed for direct blood-contacting applications or tissue integration. Adsorption of human serum proteins on four different types of biomaterials (glass, aminosilanized glass, hyaluronan and sulfated hyaluronan) was analyzed by two-dimensional electrophoresis. Desorption of proteins from the surfaces was first classically achieved by sodium dodecyl sulfate (SDS) elution. We introduced a second elution step (by use of isoelectric focusing (IEF) sample buffer consisting of urea, 3-[(3-cholamidopropyl)dimethylammonio]-1-propansulfonate, and dithioerythritol) which allows more stringent elution conditions and is a tool to evaluate the protein adsorption strength to biomaterials. Moreover, the two-step elution may discriminate between irreversible and reversible adsorption of plasma proteins for biomaterials, thus helping to elucidate the structure of protein multilayers which form a complex system at the surfaces. The IEF sample buffer proved not to alter the biomaterial structure and integrity. Hydrophobic bonds resulted to be the main strength driving protein adsorption onto our biomaterials. Apolipoproteins were the most important proteins interacting with the surfaces suggesting that high-density lipoprotein (HDL) particles could play a role in biocompatibility due to their beneficial effects on endothelial cells.     

Physical and chemical adsorption of Mucor javanicus lipase on SBA-15 mesoporous silica. Synthesis, structural characterization, and activity performance

In this work a sample of SBA-15 mesoporous silica was synthesized and characterized by TEM, XRD, and N2 adsorption. The sample had a high value of specific surface area (1007 m2 g(-1)) and total pore volume (2.1 cm3 g(-1)). The pore diameter was 67 angstroms, so it was large enough to accommodate protein molecules inside the channels. Immobilization by physical adsorption of a commercial lipase preparation from Mucor javanicus was performed at different pH values (pH 5-8). pH 6 gave the highest lipase loading and hydrolytic activity of the corresponding biocatalyst. Chemical modification of the SBA-15 via glutardialdehyde allowed also the enzyme immobilization through chemical adsorption. This preparation was active toward tributyrin hydrolysis. On the contrary, very low activity toward triolein hydrolysis was observed. The reduction of the size of the channels due the immobilization process has been suggested as a possible explanation.     

Modeling the stability and the motion of DNA nucleobases on the gold surface

We simulate the structure and dynamics of the four DNA bases on the most stable gold surface. The experimental adsorption energies are reproduced to about 1 kcal mol(-1), and the existence of anchor points in the molecules is evidenced. The simulations also show that the bases drift on the gold surface with a degree of mobility that is not inversely proportional to the experimental (and calculated) desorption energies. When the same type of calculations is applied to pairs of bases it is seen that for at least two of them, namely GG and TT, there is a cooperative effect that increases their adsorption energy with respect to those of the single molecules. The molecular mobility on the surface is still present when a pair of interacting bases is considered.     

Priifer domains with class group generated by the classes of the invertible maximal ideals

In [2] and [3] we described the double coset decomposition for the modular group SL_r+s (Z) with respect to the congruence subgroup Р _r,s (m) for any positive integer m. In the present paper we obtain the double coset decomposition of SL_r+s (R) with respect to Р _r,s (I). Where R is a commutative ring with unioty 1, and I is a nonzero ideal in R such that R/I is the direct sum of local principal ideal rings; thus generalize the results obtained in [2] and [3].     

States of water,surface and rheological characterisation of a new biohydrogel as articular cartilage substitute

PVA based hydrogel was synthesised using, as crosslinking agent, trisodium trimetaphosphate (STMP) and its morphology was modified inducing a microporous structure to obtain potential substitutes for cartilage tissue. The hydrogel was characterised by Infrared Spectroscopy combined with Time of flight mass spectrometry (ToF‐SIMS) that confirmed the successful occurrence of crosslinking reaction, the hyphotised crosslinking arm and its homogeneous distribution. The mechanical spectra of the fully hydrated samples confirmed covalently crosslinked systems with a rheological behaviour similar to that of tibial cartilage. Further analysis in terms of water content measurements, thermal stability and cytotoxicity confirmed the applicability of such a hydrogel as cartilage substitute. Copyright © 2013 John Wiley & Sons, Ltd.