Myosin-cross-reactive antigen (MCRA) protein from <Emphasis Type="Italic">Bifidobacterium breve</Emphasis> is a FAD-dependent fatty acid hydratase which has a function in stress protection

Background  

The aim of this study was to determine the catalytic activity and physiological role of myosin-cross-reactive antigen (MCRA) from Bifidobacterium breve NCIMB 702258. MCRA from B. breve NCIMB 702258 was cloned, sequenced and expressed in heterologous hosts (Lactococcus and Corynebacterium) and the recombinant proteins assessed for enzymatic activity against fatty acid substrates.     

The electronic spectrum of Si3 I: triplet D(3h) system

We report the measurement of a jet-cooled electronic spectrum of the silicon trimer. Si(3) was produced in a pulsed discharge of silane in argon, and the excitation spectrum examined in the 18 000-20 800 cm(-1) region. A combination of resonant two-color two-photon ionization (R2C2PI) time-of-flight mass spectroscopy, laser-induced fluorescence/dispersed fluorescence, and equation-of-motion coupled-cluster calculations have been used to establish that the observed spectrum is dominated by the 1(3)A(1)" - a? (3)A(2)' transition of the D(3h) isomer. The spectrum has an origin transition at 18,600 ± 4 cm(-1) and a short progression in the symmetric stretch with a frequency of ～445 cm(-1), in good agreement with a predicted vertical transition energy of 2.34 eV for excitation to the 1(3)A(1)" state, which has a calculated symmetric stretching frequency of 480 cm(-1). In addition, a ～505 cm(-1) ground state vibrational frequency determined from sequence bands and dispersed fluorescence is in agreement with an earlier zero-electron kinetic energy study of the lowest D(3h) state and with theory. A weaker, overlapping band system with a ～360 cm(-1) progression, observed in the same mass channel (m/z = 84) by R2C2PI but under different discharge conditions, is thought to be due to transitions from the (more complicated) singlet C(2v) ground state ((1)A(1)) state of Si(3). Evidence of emission to this latter state in the triplet dispersed fluorescence spectra suggests extensive mixing in the excited triplet and singlet manifolds. Prospects for further spectroscopic characterization of the singlet system and direct measurement of the energy separation between the lowest singlet and triplet states are discussed.     

Kinetic isotope effects for Cl + CH4 ⇌ HCl + CH3 calculated using ab initio semiclassical transition state theory

Calculations were carried out for 25 isotopologues of the title reaction for various combinations of (35)Cl, (37)Cl, (12)C, (13)C, (14)C, H, and D. The computed rate constants are based on harmonic vibrational frequencies calculated at the CCSD(T)/aug-cc-pVTZ level of theory and X(ij) vibrational anharmonicity coefficients calculated at the CCSD(T) /aug-cc-pVDZ level of theory. For some reactions, anharmonicity coefficients were also computed at the CCSD(T)/aug-cc-pVTZ level of theory. The classical reaction barrier was taken from Eskola et al. [J. Phys. Chem. A 2008, 112, 7391-7401], who extrapolated CCSD(T) calculations to the complete basis set limit. Rate constants were calculated for temperatures from ～100 to ～2000 K. The computed ab initio rate constant for the normal isotopologue is in good agreement with experiments over the entire temperature range (～10% lower than the recommended experimental value at 298 K). The ab initio H/D kinetic isotope effects (KIEs) for CH(3)D, CH(2)D(2), CHD(3), and CD(4) are in very good agreement with literature experimental data. The ab initio (12)C/(13)C KIE is in error by ～2% at 298 K for calculations using X(ij) coefficients computed with the aug-cc-pVDZ basis set, but the error is reduced to ～1% when X(ij) coefficients computed with the larger aug-cc-pVTZ basis set are used. Systematic improvements appear to be possible. The present SCTST results are found to be more accurate than those from other theoretical calculations. Overall, this is a very promising method for computing ab initio kinetic isotope effects.     

On the molecular structure of HOOO

The molecular structure of trans, planar hydridotrioxygen (HOOO) has been examined by means of isotopic spectroscopy using Fourier transform microwave as well as microwave-millimeter-wave double resonance techniques, and high-level coupled cluster quantum-chemical calculations. Although this weakly bound molecule is readily observed in an electrical discharge of H(2)O and O(2) heavily diluted in an inert buffer gas, we find that HOOO can be produced with somewhat higher abundance using H(2) and O(2) as precursor gases. Using equal mixtures of normal and (18)O(2), it has been possible to detect three new isotopic species, H(18)OOO, HO(18)O(18)O, and H(18)O(18)O(18)O. Detection of these species and not others provides compelling evidence that the dominant route to HOOO formation in our discharge is via the reaction OH + O(2) → HOOO. By combining derived rotational constants with those for normal HOOO and DOOO, it has been possible to determine a fully experimental (r(0)) structure for this radical, in which all of the structural parameters (the three bond lengths and two angles) have been varied. This best-fit structure possesses a longer central O-O bond (1.684 A?), in agreement with earlier work, a markedly shorter O-H bond distance (0.913 A?), and a more acute [angle]HOO angle (92.4°) when compared to equilibrium (r(e)) structures obtained from quantum-chemical calculations. To better understand the origin of these discrepancies, vibrational corrections have been obtained from coupled-cluster calculations. An empirical equilibrium (r(e) (emp)) structure, derived from the experimental rotational constants and theoretical vibrational corrections, gives only somewhat better agreement with the calculated equilibrium structure and large residual inertial defects, suggesting that still higher order vibrational corrections (i.e., γ terms) are needed to properly describe large-amplitude motion in HOOO. Owing to the high abundance of this oxygen-chain radical in our discharge expansion, a very wide spectral survey for other oxygen-bearing species has been undertaken between 6 and 25 GHz. Only about 50% of the observed lines have been assigned to known hydrogen-oxygen molecules or complexes, suggesting that a rich, unexplored oxygen chemistry awaits detection and characterization. Somewhat surprisingly, we find no evidence in our expansion for rotational transitions of cis HOOO or from low-lying vibrationally excited states of trans HOOO under conditions which optimize its ground state lines.     

Effect of solvent polarity and electrophilicity on quantum yields and solvatochromic shifts of single-walled carbon nanotube photoluminescence

In this work, we investigate the impact of the solvation environment on single-walled carbon nanotube (SWCNT) photoluminescence quantum yield and optical transition energies (E(ii)) using a highly charged aryleneethynylene polymer. This novel surfactant produces dispersions in a variety of polar solvents having a wide range of dielectric constants (methanol, dimethyl sulfoxide, aqueous dimethylformamide, and deuterium oxide). Because a common surfactant can be used while maintaining a constant SWCNT-surfactant morphology, we are able to straightforwardly evaluate the impact of the solvation environment upon SWCNT optical properties. We find that (i) the SWCNT quantum yield is strongly dependent on both the polarity and electrophilicity of the solvent and (ii) solvatochromic shifts correlate with the extent of SWCNT solvation. These findings provide a deeper understanding of the environmental dependence of SWCNT excitonic properties and underscore that the solvent provides a tool with which to modulate SWCNT electronic and optical properties.     

Orientation dependence of broadband acoustic backscattering from live squid

A controlled laboratory experiment of broadband acoustic backscattering from live squid (Loligo pealeii) was conducted using linear chirp signals (60-103 kHz) with data collected over the full 360° of orientation in the lateral plane, in <1° increments. The acoustic measurements were compared with an analytical prolate spheroid model and a three-dimensional numerical model with randomized squid shape, both based on the distorted-wave Born approximation formulation. The data were consistent with the hypothesized fluid-like scattering properties of squid. The contributions from the front and back interfaces of the squid were found to dominate the scattering at normal incidence, while the arms had a significant effect at other angles. The three-dimensional numerical model predictions out-performed the prolate spheroid model over a wide range of orientations. The predictions were found to be sensitive to the shape parameters, including the arms and the fins. Accurate predictions require setting these shape parameters to best describe the most probable squid shape for different applications. The understanding developed here serves as a basis for the accurate interpretation of in situ acoustic scattering measurements of squid.     

Some Combinatorial and Analytical Identities

We give new proofs and explain the origin of several combinatorial identities of Fu and Lascoux, Dilcher, Prodinger, Uchimura, and Chen and Liu. We use the theory of basic hypergeometric functions, and generalize these identities. We also exploit the theory of polynomial expansions in the Wilson and Askey-Wilson bases to derive new identities which are not in the hierarchy of basic hypergeometric series. We demonstrate that a Lagrange interpolation formula always leads to very-well-poised basic hypergeometric series. As applications we prove that the Watson transformation of a balanced ${_{4}\phi_{3}}$ to a very-well-poised ${_{8}\phi_{7}}$ is equivalent to the Rodrigues-type formula for the Askey-Wilson polynomials. By applying the Leibniz formula for the Askey-Wilson operator we also establish the ${_{8}\phi_{7}}$ summation theorem.     

Spectral analyses of trans- and cis-DOCO transients via comb spectroscopy

ABSTRACT

We use time-resolved direct frequency comb spectroscopy in the mid-infrared to obtain high-resolution rovibrational spectra of products produced from the OD?+?CO reaction. In this work, we present spectral analyses for isotopologues of the transient DOCO radicals from this reaction in the OD stretch region. The analyses were performed with the aid of two different theoretical approaches based on both perturbation theory and variational calculations used for prediction of rovibrational spectra of polyatomic molecules. We discuss the advantages and challenges of our current approach for studying spectroscopy and dynamics of transient molecules.     

Classification of broadband echoes from prey of a foraging Blainville's beaked whale

Blainville's beaked whales (Mesoplodon densirostris) use broadband, ultrasonic echolocation signals with a -10 dB bandwidth from 26 to 51 kHz to search for, localize, and approach prey that generally consist of mid-water and deep-water fishes and squid. Although it is well known that the spectral characteristics of broadband echoes from marine organisms vary as a function of size, shape, orientation, and anatomical group, there is little evidence as to whether or not free-ranging toothed whales use spectral cues in discriminating between prey and nonprey. In order to study the prey-classification process, a stereo acoustic tag was deployed on a Blainville's beaked whale so that emitted clicks and the corresponding echoes from targets in the water could be recorded. A comparison of echoes from targets apparently selected by the whale and those from a sample of scatterers that were not selected suggests that spectral features of the echoes, target strengths, or both may have been used by the whale to discriminate between echoes. Specifically, the whale appears to favor targets with one or more nulls in the echo spectra and to seek prey with higher target strengths at deeper depths.