Polymerization of phosphorus containing cyclic monomers: Synthesis of polymers related to biopolymers

The mechanism of polymerization is discussed, in which cyclic esters of phosphoric acid, and related compounds are converted into linear macromolecules, modelling nucleic and teichoic acid backbones. Structures like deoxyribose polyphosphate and glycerol polyphosphate were prepared from the corresponding cyclic compounds. These polymerizations involve heterolytic breaking of the P-O bond in the cyclic monomer and proceed by ionic mechanism. Both 5- and 6-membered monomers have been polymerized. The thermodynamic parameters of the ring-chain interconversion were determined; the 5-membered rings polymerization is driven by the exothermicity of the ring-opening, whereas polymerization of several 6-membered rings is endothermic and allowed because of the positive change of entropy. Anionic polymerization, and particularly the pseudo(coordinate)anionic polymerization provides, in contrast to the cationic process, high-molecular-weight polymers with more uniform structure. Anionic polymerization proceeds mostly (at the applied conditions) on the macroion – -pairs. The elementary reactions consist of the nucleophilic attack of the paired macroanions on the phosphorus atom in the cyclic monomer molecule. Rate constants of the elementary reactions for the model monomers will be presented. Stereochemistry of the propagation steps is shown to be governed by the statistical ring-opening, leading to the three kinds of polymer units (head-to-tail and two symmetrical units). Apart from the ring-opening, the polyaddition of diepoxides to phosphorous and phosphoric acids is described. Finally, a few examples of preparation of models of biopolymers are given, namely poly(deoxyribose phosphate) and poly(glycerol phosphate).     

Investigation of reactions postulated to occur during inhibition of ribonucleotide reductases by 2'-azido-2'-deoxynucleotides

Model 3'-azido-3'-deoxynucleosides with thiol or vicinal dithiol substituents at C2' or C5' were synthesized to study reactions postulated to occur during inhibition of ribonucleotide reductases by 2'-azido-2'-deoxynucleotides. Esterification of 5'-(tert-butyldiphenylsilyl)-3'-azido-3'-deoxyadenosine and 3'-azido-3'-deoxythymidine (AZT) with 2,3-S-isopropylidene-2,3-dimercaptopropanoic acid or N-Boc-S-trityl-L-cysteine and deprotection gave 3'-azido-3'-deoxy-2'-O-(2,3-dimercaptopropanoyl or cysteinyl)adenosine and the 3'-azido-3'-deoxy-5'-O-(2,3-dimercaptopropanoyl or cysteinyl)thymidine analogs. Density functional calculations predicted that intramolecular reactions between generated thiyl radicals and an azido group on such model compounds would be exothermic by 33.6-41.2 kcal/mol and have low energy barriers of 10.4-13.5 kcal/mol. Reduction of the azido group occurred to give 3'-amino-3'-deoxythymidine, which was postulated to occur with thiyl radicals generated by treatment of 3'-azido-3'-deoxy-5'-O-(2,3-dimercaptopropanoyl)thymidine with 2,2'-azobis-(2-methyl-2-propionamidine) dihydrochloride. Gamma radiolysis of N(2)O-saturated aqueous solutions of AZT and cysteine produced 3'-amino-3'-deoxythymidine and thymine most likely by both radical and ionic processes.     

Mechanism of particle formation and kinetics of the dispersion polymerization of cyclic esters

Pseudoanionic and anionic polymerizations of ε-caprolactone and lactides in 1,4-dioxane:heptane mixtures containing poly(dodecyl acrylate)-g-poly(ε-caprolactone) yield polyesters in form of microspheres. Monitoring partition of active centers between solution and microspheres revealed that particles are formed during initial period, when macromolecules reach their critical masses (ca. 1 000) and became insoluble. Then, propagation proceeds inside of microspheres into which monomer diffuses from solution. Monitoring of variation of the number of particles in a unit volume of reaction mixture with time indicated that after a primary nucleation the delayed nucleation and aggregation are absent. In effect, microspheres with narrow diameter distribution are obtained. Kinetic measurements revealed that in the dispersion pseudoanionic (initiator (CH₃CH₂)₂AlOCH₂CH₃) and anionic (initiator (CH₃)₃SiONa) polymerizations of ε-caprolactone the overall rates of monomer conversion are from 10 to 30 times higher than for the corresponding polymerizations in solution (THF solvent). Analysis of kinetic equations indicated that the observed faster monomer conversions in polymerizations in dispersed systems are due to the high local concentrations of active centers and monomer in growing microspheres.     

Deposition of poly(styrene/alpha-tert-butoxy-omega-vinyl-benzyl-polyglycidol) microspheres on mica plates crossing the liquid-air interface: formation of stripe pattern

Formation of stripelike assemblies of poly(styrene/alpha-tert-butoxy-omega-vinyl-benzyl-polyglycidol) microspheres adsorbed on nonpatterned mica plates moving perpendicularly from suspension of particles through the water-air interface has been observed. It was found that ordered assemblies were formed by capillary forces acting on particles crossing the water-air boundary. At sufficiently high rates of plate movement (i.e., at appropriate dynamic loading conditions) the adsorbed microspheres approaching the water surface begin sliding on the plate, due to capillary forces, in the direction opposite to the plate movement and are kept below the water surface. Plate movement brings new adsorbed particles to the water-air interface, where particles are assembled into aggregates. When particle aggregates are large, the capillary forces cannot overcome shearing forces and the particle assemblies are withdrawn on the plate above the water surface. This process repeated during continuous movement of the plate results in the formation of the quite regularly distributed stripes of adsorbed microspheres. Formation of the regularly distributed particle assemblies depends on concentration of microspheres in suspension.     

Branched polyether with multiple primary hydroxyl groups: polymerization of 3-ethyl-3-hydroxymethyloxetane

Cationic polymerization of 3-ethyl-3-hydroxymethyloxetane gives branched, soluble macromolecules with multiple glycolic end groups. There are approximately 3–4 “normal” units per one branched unit.     

Allylic rearrangement of trans-pinocarveol esters

The allylic rearrangement of trans-pinocarveol esters ( I ) to myrtenol esters ( II ), a reaction of interest in the chemistry of terpenes and cannabinoids, has been theoretically investigated. The intramolecular, cyclization-induced rearrangement results in equilibrium mixtures of the starting compounds and the products with the ratio of I vs. II in the equilibrium mixture being determined by their thermodynamic stabilities. The relative thermodynamic stabilities as reflected by calculated AM1 heats of formations (ΔHf) were determined for various I-II ester pairs. The study, in agreement with available experimental evidence, indicates that generally I , which contain an endocyclic double bond, are more stable and thus predominantly form following rearrangements. In two cases (acetate and pivalate) the stability is reversed. Calculations performed for similar structures, esters of 2-methylene cyclohexane-1-ol ( IV ) and 1-cyclohexene-1-methanol ( V ) gave similar results. Structural and electronic factors which might influence the stability of these compounds were examined. Interestingly, a correlation between thermodynamic stability and dipole moments was observed. © 1996 John Wiley & Sons, Inc.     

Copolymers of 7-oxabicyclo[2.2.1] heptane with 1,3-dioxane and promesogenic telechelic oligomers thereof

Copolymers of 7-oxabicyclo[2.2.1] heptane (B) (and of its 2-methyl derivatives) with 1,3-dioxane (D) were obtained by cationic copolymerization initiated with benzoylium hexafluoroantimonate. Structure of copolymers was determined by ₁H- and ₁₃C-NMR. The proportion of the acetal bonds in copolymers was additionally confirmed in studies of the products of hydrolysis (only the acetal bonds hydrolyze). D is unable to homopolymerize for the thermodynamic reasons and therefore mostly pseudoperiodic copolymers (-DB_x-)_y are formed. Nevertheless, the reshuffling reactions are responsible for the appearance of “wrong” units. These are: the separate oxymethylene and oxy-1,3-propylene units (P, subunits of D) located between two B units. Only the acetal bonds are cleaved in the acidic hydrolysis with dilute HCl. This gives the promesogenic telechelic oligomers of mostly HO-P-B_x-OH structure. This article is the first to describe successful cationic copolymerization of a cyclic acetal with a cyclic ether. Moreover, the inability of D to homopolymerize gives the thermodynamic basis of the pseudoperiodic copolymer formation. © 1997 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 35 : 1733–1742, 1997     

On Suboptimal LCS-alignments for Independent Bernoulli Sequences with Asymmetric Distributions

Let X = X ₁ ... X _n and Y = Y ₁ ... Y _n be two binary sequences with length n. A common subsequence of X and Y is any subsequence of X that at the same time is a subsequence of Y; The common subsequence with maximal length is called the longest common subsequence (LCS) of X and Y. LCS is a common tool for measuring the closeness of X and Y. In this note, we consider the case when X and Y are both i.i.d. Bernoulli sequences with the parameters ϵ and 1 − ϵ, respectively. Hence, typically the sequences consist of large and short blocks of different colors. This gives an idea to the so-called block-by-block alignment, where the short blocks in one sequence are matched to the long blocks of the same color in another sequence. Such and alignment is not necessarily a LCS, but it is computationally easy to obtain and, therefore, of practical interest. We investigate the asymptotical properties of several block-by-block type of alignments. The paper ends with the simulation study, where the of block-by-block type of alignments are compared with the LCS.