Detection of formate, rather than carbon monoxide, as the stoichiometric coproduct in conversion of fatty aldehydes to alkanes by a cyanobacterial aldehyde decarbonylase

The second of two reactions in a recently discovered pathway through which saturated fatty acids are converted to alkanes (and unsaturated fatty acids to alkenes) in cyanobacteria entails scission of the C1-C2 bond of a fatty aldehyde intermediate by the enzyme aldehyde decarbonylase (AD), a ferritin-like protein with a dinuclear metal cofactor of unknown composition. We tested for and failed to detect carbon monoxide (CO), the proposed C1-derived coproduct of alkane synthesis, following the in vitro conversion of octadecanal (R-CHO, where R = n-C(17)H(35)) to heptadecane (R-H) by the Nostoc punctiforme AD isolated following its overproduction in Escherichia coli. Instead, we identified formate (HCO(2)(-)) as the stoichiometric coproduct of the reaction. Results of isotope-tracer experiments indicate that the aldehyde hydrogen is retained in the HCO(2)(-) and the hydrogen in the nascent methyl group of the alkane originates, at least in part, from solvent. With these characteristics, the reaction appears to be formally hydrolytic, but the improbability of a hydrolytic mechanism having the primary carbanion as the leaving group, the structural similarity of the ADs to other O(2)-activating nonheme di-iron proteins, and the dependence of in vitro AD activity on the presence of a reducing system implicate some type of redox mechanism. Two possible resolutions to this conundrum are suggested.     

Light emission from porous silicon single and multiple cavities

Experimental and theoretical techniques are used to examine the effects of microstructuring on the optical properties of multilayer, single and multiple microcavity structures fabricated from porous silicon. Measurements of the reflectivity and photoluminescence spectra of three multilayer samples are presented. The results are modelled using a transfer matrix technique including a negative absorption term to represent the effect of spontaneous emission which gives luminescence. The emitted light is strongly controlled by the optical modes of the structures and very good agreement is observed between theory and experiment.     

The activity of Escherichia coli cyclopropane fatty acid synthase depends on the presence of bicarbonate

Cyclopropane fatty acid (CFA) synthases catalyze the formation of cyclopropane rings on isolated and unactivated olefinic bonds within various fatty acids; the methylene carbon is derived from the activated methyl group of (S)-adenosylmethionine. The E. coli enzyme is the prototype for this class of enzymes, which include the cyclopropane mycolic acid (CMA) synthases, which are potential targets for the design of antituberculosis agents. Crystal structures of several CMA synthases have recently been solved, and electron density attributed to a bicarbonate ion was found in or near the active site. Because a functional assay for CMA synthases has not been developed, the relevance of the bicarbonate ion has not been established. CFA synthase is 30-35% identical to the CMA synthases that have been analyzed structurally, suggesting that the mechanisms of these enzymes are conserved. In this work, we show that indeed the activity of CFA synthase requires bicarbonate, and that it is inhibited by borate, a planar trigonal molecule that mimics the structure of bicarbonate. We also show that substitutions of the conserved amino acids that act as ligands to the bicarbonate ion based on the structure of CMA synthases result in drastic losses in the activity of the protein.     

The chemical potential for the inhomogeneous electron liquid in terms of its kinetic and potential parts with special consideration of the surface potential step and BCS-BEC crossover

The chemical potential μ of a many-body system is valuable since it carries fingerprints of phase changes. Here, we summarize results for μ for a three-dimensional electron liquid in terms of average kinetic and potential energies per particle. The difference between μ and the energy per particle is found to be exactly the electrostatic potential step at the surface. We also present calculations for an integrable one-dimensional many-body system with delta function interactions, exhibiting a BCS-BEC crossover. It is shown that in the BCS regime the chemical potential can be expressed solely in terms of the ground-state energy per particle. A brief discussion is also included of the strong coupling BEC limit.