Layer‐dependent resonant Raman scattering of a few layer MoS2

We report resonant Raman scattering of MoS₂ layers comprising of single, bi, four and seven layers, showing a strong dependence on the layer thickness. Indirect band gap MoS₂ in bulk becomes a direct band gap semiconductor in the monolayer form. New Raman modes are seen in the spectra of single‐ and few‐layer MoS₂ samples which are absent in the bulk. The Raman mode at ~230 cm⁻¹ appears for two, four and seven layers. This mode has been attributed to the longitudinal acoustic phonon branch at the M point (LA(M)) of the Brillouin zone. The mode at ~179 cm⁻¹ shows asymmetric character for a few‐layer sample. The asymmetry is explained by the dispersion of the LA(M) branch along the Γ‐M direction. The most intense spectral region near 455 cm⁻¹ shows a layer‐dependent variation of peak positions and relative intensities. The high energy region between 510 and 645 cm⁻¹ is marked by the appearance of prominent new Raman bands, varying in intensity with layer numbers. Resonant Raman spectroscopy thus serves as a promising non invasive technique to accurately estimate the thickness of MoS₂ layers down to a few atoms thick. Copyright © 2012 John Wiley & Sons, Ltd.     

A posteriori testing of the flame surface density transport equation for LES

Flame Surface Density (FSD) models for Large Eddy Simulation (LES) are implemented and tested for a canonical configuration and a practical bluff body stabilised burner, comparing common algebraic closures with a transport equation closure in the context of turbulent premixed combustion. The transported method is expected to yield advantages over algebraic closures, as the equilibrium of subgrid production and destruction of FSD is no longer enforced and resolved processes of strain, propagation and curvature are explicitly accounted for. These advantages might have the potential to improve the ability to capture large-scale unsteady flame propagation in situations with combustion instabilities or situations where the flame encounters progressive wrinkling with time. The initial study of a propagating turbulent flame in wind-tunnel turbulence shows that the Algebraic Flame Surface Density (FSDA) method can predict an excessively wrinkled flame under fine grid conditions, potentially increasing the consumption rate of reactants to artificially higher levels. In contrast, the Flame Surface Density Transport (FSDT) closure predicts a smooth flame front and avoids the formation of artificial flame cusps when the grid is refined. Five FSDA models and the FSDT approach are then applied to the LES of the Volvo Rig. The predicted mean velocities are found to be relatively insensitive to the use of the FSDT and FSDA approaches, whereas temperature predictions exhibit appreciable differences for different formulations. The FSDT approach yields very similar temperature predictions to two of the tested FSDA models, quantitatively capturing the mean temperature. Grid refinement is found to improve the FSDT predictions of the mean flame spread. Overall, the paper demonstrates that the apparently complicated FSD transport equation approach can be implemented and applied to realistic, strongly wrinkled flames with good success, and opens up the field for further work to improve the models and the overall FSDT approach.     

Rayleigh light scattering from hydrogen‐bonded dimers of small astrophysical molecules

High level ab initio calculations of the Rayleigh scattering activities of the hydrogen‐bonded dimers of formic acid (HCOOH), nitrosyl hydride (HNO), and hydrogen cyanide (HCN) molecules have been performed. All these molecules have already been detected in interstellar space and are of great importance from the astrochemical point of view. The geometries of the homo‐ and hetero‐dimers have been optimized using Hartree–Fock and second‐order Møller‐Plesset perturbation theory. Dipole moment, mean dipole polarizability, and polarizability anisotropy have been calculated utilizing Pople‐type 6‐311++G(d,p) and Dunning's aug‐cc‐pVDZ basis sets for all the complexes. The polarizabilities are then used to calculate and analyze the Rayleigh scattering parameters. The results for the dimers, HCN···HCN, HCOOH···HCOOH, HNO···HNO, HCN···HCOOH, HCN···HNO, and HNO···HCOOH are compared with those of the isolated molecules, HCN, HCOOH, and HNO to see the effect of hydrogen bond formation on the molecular interaction with radiation. © 2011 Wiley Periodicals, Inc.     

Analyte-driven switching of DNA charge transport: de novo creation of electronic sensors for an early lung cancer biomarker

A general approach is described for the de novo design and construction of aptamer-based electrochemical biosensors, for potentially any analyte of interest (ranging from small ligands to biological macromolecules). As a demonstration of the approach, we report the rapid development of a made-to-order electronic sensor for a newly reported early biomarker for lung cancer (CTAP III/NAP2). The steps include the in vitro selection and characterization of DNA aptamer sequences, design and biochemical testing of wholly DNA sensor constructs, and translation to a functional electrode-bound sensor format. The working principle of this distinct class of electronic biosensors is the enhancement of DNA-mediated charge transport in response to analyte binding. We first verify such analyte-responsive charge transport switching in solution, using biochemical methods; successful sensor variants were then immobilized on gold electrodes. We show that using these sensor-modified electrodes, CTAP III/NAP2 can be detected with both high specificity and sensitivity (K(d) ～1 nM) through a direct electrochemical reading. To investigate the underlying basis of analyte binding-induced conductivity switching, we carried out F?rster Resonance Energy Transfer (FRET) experiments. The FRET data establish that analyte binding-induced conductivity switching in these sensors results from very subtle structural/conformational changes, rather than large scale, global folding events. The implications of this finding are discussed with respect to possible charge transport switching mechanisms in electrode-bound sensors. Overall, the approach we describe here represents a unique design principle for aptamer-based electrochemical sensors; its application should enable rapid, on-demand access to a class of portable biosensors that offer robust, inexpensive, and operationally simplified alternatives to conventional antibody-based immunoassays.     

Solid-state nuclear magnetic resonance studies delineate the role of the protein in activation of both aromatic rings of thiamin

Knowledge of the state of ionization and tautomerization of heteroaromatic cofactors when enzyme-bound is essential for formulating a detailed stepwise mechanism via proton transfers, the most commonly observed contribution to enzyme catalysis. In the bifunctional coenzyme, thiamin diphosphate (ThDP), both aromatic rings participate in catalysis, the thiazolium ring as an electrophilic covalent catalyst and the 4'-aminopyrimidine as acid-base catalyst involving its 1',4'-iminopyrimidine tautomeric form. Two of four ionization and tautomeric states of ThDP are well characterized via circular dichroism spectral signatures on several ThDP superfamily members. Yet, the method is incapable of providing information about specific proton locations, which in principle may be accessible via NMR studies. To determine the precise ionization/tautomerization states of ThDP during various stages of the catalytic cycle, we report the first application of solid-state NMR spectroscopy to ThDP enzymes, whose large mass (160,000-250,000 Da) precludes solution NMR approaches. Three de novo synthesized analogues, [C2,C6'-(13)C(2)]ThDP, [C2-(13)C]ThDP, and [N4'-(15)N]ThDP used with three enzymes revealed that (a) binding to the enzymes activates both the 4'-aminopyrimidine (via pK(a) elevation) and the thiazolium rings (pK(a) suppression); (b) detection of a pre-decarboxylation intermediate analogue using [C2,C6'-(13)C(2)]ThDP, enables both confirmation of covalent bond formation and response in 4'-aminopyrimidine ring's tautomeric state to intermediate formation, supporting the mechanism we postulate; and (c) the chemical shift of bound [N4'-(15)N]ThDP provides plausible models for the participation of the 1',4'-iminopyrimidine tautomer in the mechanism. Unprecedented detail is achieved about proton positions on this bifunctional coenzyme on large enzymes in their active states.     

Voids and necks in liquid ammonia and their roles in diffusion of ions of varying size

Voids in a medium are defined as the regions that are located outside an appropriately defined occupied space associated with molecules. Dynamical properties like diffusion can be related to the structure and distribution of voids present in the medium. This work deals with an analysis of voids and diffusion in liquid ammonia. The analysis of voids is done by the construction of Voronoi polyhedra and Delaunay tessellation. We have performed a series of molecular dynamics simulations of monovalent cations and anions of varying size in liquid ammonia at two different temperatures of 210 and 240 K to investigate the effects of ion size on the diffusion of ions and roles of voids in determining the observed diffusion behavior. It is found that with the increase of ion size, the diffusion coefficients first increase and then pass through a maximum similar to the behavior observed earlier for diffusion in water. The observed results are explained in terms of passage through voids and necks that are present in liquid ammonia. © 2012 Wiley Periodicals, Inc.     

Sodium titaniumsilicate as ion exchanger: synthesis, characterization and application in separation of 90Y from 90Sr

A new inorganic material, sodium titaniumsilicate has been synthesized, and characterized by physicochemical and spectroscopic tools. The thermal and radiation stability of the compound was checked by TGA technique and a ??-irradiating chamber with a total dose rate of 5?kGy/h. The compound is highly stable towards thermal, chemical and total radiation dose of 64?kGy. The study of the exchange capacity of the material towards different alkali and alkaline earth metal ions showed that the sorption capacities of the alkali metal ions were greater than those of alkaline earth metal ions. The crystalline state of this new inorganic material is very useful as an inorganic ion exchanger to have the carrier free short-lived ??-active daughter product ⁹⁰Y from the long-lived ⁹⁰Sr of the radioactive equilibrium mixture. The absorbed daughter was recovered by using 1.0% EDTA solutions at pH 7.0 as eluting agent. The features and trends in elution are encouraging to apply this material as an exchanger in radionuclide generator system.     

LIF spectroscopy of jet-cooled 1:1 complex between 7-azaindole and 2-pyrrolidinone

Laser-induced fluorescence (LIF) spectra of a 1:1 complex between 7-azaindole (7AI) and five-member cyclic amide 2-pyrrolidinone (2-PDN) have been measured in a supersonic free jet expansion. The bands in the excitation spectrum appear doublet, which has been attributed to splitting of the zero-point level in the ground state due to puckering of 2-PDN moiety of the complex in a symmetric double minimum potential. This feature is consistent with low puckering barrier (～260 cm^?1) predicted by electronic structure calculation. The complex emits only UV fluorescence from locally excited state in the jet, but visible tautomer fluorescence is observed in hydrocarbon solution.