Pyrrolo-dC and pyrrolo-C: fluorescent analogs of cytidine and 2-deoxycytidine for the study of oligonucleotides

Pyrrolo-dC (1a, 6-methyl-3-(2-deoxy-β-d-ribofuranosyl)-3H-pyrrolo[2,3-d]pyrimidin-2-one) and its cyanoethyl phosphoramidite 2a were synthesized. The latter was incorporated into oligodeoxyribonucleotides by standard automated synthesis techniques, where pyrrolo-dC was found to serve as a fluorescent analog of deoxycytidine. The cyanoethylphosphoramidite (2b) of pyrrolo-C (2a, 6-methyl-3-(β-d-ribofuranosyl)-3H-pyrrolo[2,3-d]pyrimidin-2-one) was also synthesized and may find use for the site-specific incorporation of a fluorescent cytidine analog into oligoribonucleotides.     

Reactive scattering of H2 from Cu(100): six-dimensional quantum dynamics results for reaction and scattering obtained with a new, accurately fitted potential-energy surface

Six-dimensional quantum dynamical calculations are reported for the dissociative chemisorption of (v=0, 1, j=0) H(2) on Cu(100), and for rovibrationally inelastic scattering of (v=1, j=1) H(2) from Cu(100). The dynamics results were obtained using a new potential-energy surface (PES5), which was based on density-functional calculations using a slab representation of the adsorbate-substrate system and a generalized gradient approximation to the exchange-correlation energy. A very accurate method (the corrugation reducing procedure) was used to represent the density-functional theory data in a global potential-energy surface. With the new, more accurately fitted PES5, the agreement between the dynamics results and experimental results for reaction and rovibrationally elastic scattering is not as good as was obtained with a previous potential-energy surface (PES4), which was based on a subset of the density-functional theory data not yet including the results for the low-symmetry Cu sites. Preliminary density-functional theory results suggest that the agreement between theory and experiment will improve over that obtained with PES5 if the density-functional calculations are repeated using a larger basis set and using more copper layers than employed in PES4 and PES5.     

The electrochemistry of organotransition-metal complexes : II. Formation and reactivity of the radical cations [trans-Fe(CO3(PR3)2]+ and [Fe(CO)3 (Ph2 PCH2 CH2 PPh2)]+

[Fe(CO)₃ L₂] (L = PPh₃, PPh₂Me, P(OPh)₃ or P(NMe₂)₃; L₂ = Ph₂ PCH₂ CH₂ PPh₂⁺) undergo reversible one-electron oxidations to give the radical cations [Fe(CO)₃L₂]⁺ which have been studied by IR and ESR spectroscopy.     

Structural Influence of Lone Pairs in GeP2N4, a Germanium(II) Nitridophosphate

Owing to their widespread properties, nitridophosphates are of high interest in current research. Explorative high-pressure high-temperature investigations yielded various compounds with stoichiometry MP₂N₄ (M=Be, Ca, Sr, Ba, Mn, Cd), which are discussed as ultra-hard or luminescent materials, when doped with Eu²⁺. Herein, we report the first germanium nitridophosphate, GeP₂N₄, synthesized from Ge₃N₄ and P₃N₅ at 6 GPa and 800 °C. The structure was determined by single-crystal X-ray diffraction and further characterized by energy-dispersive X-ray spectroscopy, density functional theory calculations, IR and NMR spectroscopy. The highly condensed network of PN₄-tetrahedra shows a strong structural divergence to other MP₂N₄ compounds, which is attributed to the stereochemical influence of the lone pair of Ge²⁺. Thus, the formal exchange of alkaline earth cations with Ge²⁺ may open access to various compounds with literature-known stoichiometry, however, new structures and properties.     

Ellipsometry as a probe of crystallization in binary blends of a sphere‐forming diblock copolymer

Ellipsometry is used to measure the crystallization and melting temperature of a bidisperse blend of a crystalline‐amorphous diblock copolymer. Binary blends of sphere‐forming poly(butadiene‐ethylene oxide) (PB‐PEO) of two different molecular weights are prepared. The two PB‐PEO diblocks that are used share the same amorphous majority PB block length but different crystalline PEO minority block length. As the concentration of higher molecular weight diblock in the blend is increased, the size of the PEO spherical domains swell, providing access to the full range of domain sizes between the limits of the two neat diblock components. The change in domain size is consistent with a monotonic change in both the crystallization and melting temperatures. © 2011 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys, 2011     

联苯胺分光光度法测定食盐中碘含量

基于在盐酸介质中,碘酸钾氧化联苯胺使其显色,提出了光度法测定食盐中微量碘的方法。在40℃的水浴中,当2 mol.L-1盐酸溶液用量为1.00 mL0、.42 g.L-1联苯胺溶液用量为0.80 mL时,方法的线性范围为100~1 400μg.L-1,最大吸收波长在425 nm处,表观摩尔吸光率为1.4×105L.mol-1.cm-1。用于测定加碘食盐中碘含量的测定,回收率在97.5%~101.2%之间,相对标准偏差(n=7)在0.9%~1.9%之间。     

Static surface temperature effects on the dissociation of H(2) and D(2) on Cu(111)

A model for taking into account surface temperature effects in molecule-surface reactions is reported and applied to the dissociation of H(2) and D(2) on Cu(111). In contrast to many models developed before, the model constructed here takes into account the effects of static corrugation of the potential energy surface rather than energy exchange between the impinging hydrogen molecule and the surface. Such an approximation is a vibrational sudden approximation. The quality of the model is assessed by comparison to a recent density functional theory study. It is shown that the model gives a reasonable agreement with recently performed ab initio molecular dynamics calculations, in which the surface atoms were allowed to move. The observed broadening of the reaction probability curve with increasing surface temperature is attributed to the displacement of surface atoms, whereas the effect of thermal expansion is found to be primarily a shift of the curve to lower energies. It is also found that the rotational quadrupole alignment parameter is generally lowered at low energies, whereas it remains approximately constant at high energies. Finally, it is shown that the approximation of an ideal static surface works well for low surface temperatures, in particular for the molecular beams for this system (T(s) = 120 K). Nonetheless, for the state-resolved reaction probability at this surface temperature, some broadening is found.     

Structures and Spectroscopy of some Adducts of Coinage Metal(I) Cyanides with ‘Tetrahedral’‐Unidentate‐N‐Bases

Crystallization of copper(I) cyanide from piperidine (‘pip’) solution yields an adduct of CuCN : pip (3 : 4) ratio, as established by a single crystal X‐ray structure determination, which also shows the complex to have a single‐stranded ···Cu(CN)Cu(CN)···spine (C,N scrambled), one‐third of the copper atoms carrying a pair of pip ligands, the others only one. Crystallization of silver(I) cyanide from piperidine (‘pip’) or cyclohexylamine (‘CyNH₂’) solutions yields adducts of the unusual AgX : unidentate‐N‐base (1 : 2) stoichiometry. The CyNH₂ adduct is, unusually for cyanide complexes of this type, mononuclear with a trigonal planar silver atom, [(NC)Ag(H₂NCy)₂], the AgCN component lying along the intersection of two crystallographic mirror planes which bisect and relate the H₂NCy ligands (Ag‐C, N 2.067(3), 2.335(2) Å; N‐Ag‐N, C 80·80(6), 139.60(4)°). In the pip adduct, the immediate silver atom environment is also three‐coordinate (Ag‐C; N, N 2.080(1); 2.288, 2.443(1) Å; N‐Ag‐N 88·34(4), N‐Ag‐C 144.47(4), 125.07(4), (Σ357.₉°) perturbed toward two‐coordination, but the silver atom environment geometry is further perturbed from planarity by the parallel approach of an inversion‐related molecule (Ag···C′ 2.926(1) Å (Ag···Ag′ 3.1842(2)°) forming a loose, albeit still discrete, dimer. Key features in the IR spectra of the above compounds and of AgCN : pip (1 : 1) and CuCN : CyNH₂ (2 : 3) are assigned and discussed in terms of the structures or of proposed structures in the case of the latter two adducts. The structure of [ClAg(pip)₃], adventitiously obtained, is also described (Ag‐Cl 2.471(3); Ag‐N 2.147(13), 2.188(7) (x2) Å; Cl‐Ag‐N 96.1(3), 98.5(2), N‐Ag‐N 116.3(2) (x2), 122.1(3)°).