最优化方法任分子识别中的应用

分子识别是指两个或多个分子靠非共价键专一地结合在一起．分子识别在物质的形成,细胞信号的传递,基因信息的表达和药物的设计等方面起重要的作用．我们首先对数学和计算方法在分子识别上的应用作了回顾,并从量子力学,经典分子力学和热力学上解释分子识别可转换成一类最优化问题．其次,我们指出了解决这类最优化问题的困难．最后,我们报告了在预报配体与蛋白质识别上所获得的一类新的选择方法．这类方法可将预报的成功率从63％提高到90％．     

Synthesis of Boc-Amino Tetrazoles Derived from α-Amino Acids

A simple route for the synthesis of Boc-protected tetrazole analogs of amino acids starting from N ^α-Boc amino acids has been described. The [2 + 3] cycloaddition of Boc-α-amino nitrile and sodium azide in the presence of a catalytic amount of zinc bromide yielded the desired tetrazoles in good yields and purity. All the compounds obtained have been characterized by ¹H and ¹³C-NMR and mass spectral studies.     

Synthesis of Ureido-Linked Glycosylated Amino Acids from N α-Fmoc-Asp/Glu-5-oxazolidinones and Their Application to Neoglycopeptide Synthesis

A simple route for the synthesis of ureido-linked glycosylated amino acids has been described. The key step involves the reaction of isocyanates derived from N ^α-Fmoc-Asp/Glu-5-oxazolidinones 1 with glycosyl amines followed by hydrolysis. The resulting ureido-linked glycosylated amino acids have been incorporated into peptides. The overall procedure is simple, high-yielding, and involves fewer steps.     

DMSO/NaNO2/49% HBr: A Novel and Powerful Oxidant for the Direct Conversion of Primary Benzylamines to Benzoic Acids

A mixture of DMSO, NaNO₂, and 49% HBr is found to oxidize primary benzyl amines to benzoic acids at 100°C.     

Performance of hexamer peptide ligands for affinity purification of immunoglobulin G from commercial cell culture media

Previous work has reported on the identification and characterization of the hexapeptide ligands HWRGWV, HYFKFD, and HFRRHL for the affinity capture of IgG through specific binding to its Fc fragment. This paper addresses issues related to the successful application of these ligands, on a commercial methacrylate chromatographic resin, for the purification of IgG from mammalian cell culture fluids. The concentrations of sodium chloride and sodium caprylate in the binding buffer were optimized to maximize the purity and yield of IgG upon elution. Screening of several regeneration conditions found that either 2M guanidine-HCl or a combination of 0.85% phosphoric acid followed by 2M urea resulted in complete recovery of the IgG adsorption capacity and that the column could be reused over many cycles. The hexapeptide ligands were used for the purification of humanized and chimeric monoclonal antibodies from two commercial CHO cell culture fluids. The chimeric MAb of IgG1 subclass was purified using the HWRGWV resin whereas the humanized MAb of IgG4 subclass was purified using the HWRGWV, HYFKFD and HFRRHL resins. The purities and yields obtained for both the MAbs were found to be higher than 94% and 85% respectively. These results compare well with the yields and purities obtained using Protein G columns. The residual DNA and host cell protein reduction obtained by the HWRGWV resin was in the range of 4 log reduction value (LRV) and 2 LRV respectively, comparable to those reported for Protein A resins. The dynamic binding capacity of all three peptide resins for the humanized monoclonal antibody was in the range of 20mg/mL.     

Radiation induced oxidation of hydroxy indoles by NO and Br radicals: effect of pH

The reactions of NO and Br radicals with 5‐hydroxyindole (HIn), 5‐hydroxytryptophol (HTpl), 5‐hydroxytryptophan (HTpn) and 5‐hydroxytryptamine (HTpe) were studied using pulse radiolysis. The rate constants for their reaction with NO radical were found to vary from 10⁵ to 10⁷ dm³ mol^?1 s^?1 in the pH range 5–9 but a higher value (k = 1.4 ± 0.01 × 10⁸ dm³ mol^?1 s^?1) was noticed in HTpe at pH 9. The gradual increase in reactivity with pH is due to the decrease in the reduction potentials of indoloxyl radicals with E = 0.55 V at pH 9. In contrast, the rate constants with Br radical were found to be diffusion controlled and remained unaffected by the pH. The transient spectra measured are attributed to the indoloxyl radical formed on oxidation with λ_max at 420 nm. The indoloxyl radicals further react with the parent hydroxy indole derivative forming the radical adduct and their decay was found to be pH dependent in derivatives containing an amino group. At pH 5, no decay of the radical adducts was seen in all derivatives up to 5 ms whereas those with the amino group decayed faster at pH 9. The total yields of the oxygen centred and carbon centred radicals formed in the reaction of NO radical with hydroxy indoles were found to be nearly equal to G(NO). Our results suggest that NO radical is inefficient in oxidizing hydroxy indoles under physiological conditions preventing the formation of toxic dimers of indole derivatives. Copyright © 2010 John Wiley & Sons, Ltd.     

Redox reactions of 2-hydroxy pyridine: A pulse radiolysis study

Rate constants for reactions of 2-pyridinol with one electron reductants, such ase _aq ⁻ and H atoms and one-electron oxidants, viz. OH, N₃, Br ₂ ⁻ , C1 ₂ ⁻ and O⁻ have been determined at different pH values using the pulse radiolysis technique. From the corrected absorption spectra of the product transient species, the extinction coefficients of these species at their respective absorption maxima have been determined. The kinetics of decay of these transients have been investigated. ThepK _a values of transients formed bye _aq ⁻ and OH radical reactions have been estimated to be 7.6 and 3.5 respectively. Rate constants for electron transfer from semireduced 2-pyridinol to different electron acceptors have been determined.     

An expeditious access of 2,5′-dioxo-5′,6′,7′,8′-tetrahydro-1′H-spiro[indoline-3,4′-quinoline]-3′-carboxylate by reaction of isatin,ethyl cyanoacetate and enaminone in water

We have demonstrated three component reaction of isatin, enaminone and ethyl cyanoacetate leading to sprirooxindole scaffold without catalyst in water. The synthetic protocol has several advantages like wide substrate scope, atom-economy and operationally simple experimental procedures which provides rapid access to library of compounds. The mechanistic details of the reaction has been investigated during the course of study.