Capillary electrochromatography of peptides and proteins

This review surveys the accomplishments in the separation of peptides and proteins by capillary electrochromatography (CEC) over the last decade. A significant number of research articles have been published on this topic since the last review. Peptide and proteins separations have been carried out in all three formats of CEC, i.e., packed bed, continuous bed and open-tubular (OT) format. In addition to electrophoresis, different chromatographic modes have been successfully exploited with the most prevalent being reversed-phase mode followed by ion-exchange. Although many researchers continue to use model proteins and peptides primarily to evaluate the performance of novel stationary phases some researchers have also applied CEC to the analysis of real-life samples. The potential of CEC to yield complementary information and sometimes a superior separation with respect to established techniques, i.e., microbore HPLC and capillary electrophoresis has been demonstrated. Instrumental modifications in order to facilitate coupling of CEC to mass spectrometry have further upgraded the value of CEC for proteomic analysis. Capillaries are still the separation vehicle of choice for most researchers yet the microfluidic platform is gaining momentum, propelled particularly by its potential for multitasking, e.g., performing different chromatographic modes in series.     

Pyrolysis–GC–MS used to study the thermal degradation of polymers containing chlorine III. Kinetics and mechanisms of polychloroprene pyrolysis. Selected ion current plots used to evaluate rate constants for the evolution of HCl and other degradation products

The thermal degradation of polychloroprene [poly(2-chlorobutadiene)/Neoprene] has been studied at 387°C by pyrolysis–GC–MS techniques. First, the overall rate of production of volatile products was measured utilising total ion current (TIC) curves obtained from sequence pyrolysis experiments in which the products were not chromatographically resolved. This overall rate decreases abruptly during the course of the pyrolysis. The early stage (Stage 1) was calculated to have a rate constant k₁=0.065 s⁻¹, and in Stage 2 this falls to k₂=0.013 s⁻¹. Kinetic analyses of these results show that these stages are the consequence of fast and slow independent parallel degradation processes, in which the fast process is limited in some way so that after about 40 s it is virtually complete, and then only the slow process remains. The kinetics also indicate that the limiting yield (number fraction) of molecules produced by the fast process is approx. 60% of the total molecules produced by the end of the pyrolysis. Selected Ion Current (SIC) curves corresponding to the mass numbers in the MS cracking pattern of hydrogen chloride (i.e. m/z=35, 36, 37, and 38) were then extracted from the above data, and these confirmed that HCl is a pyrolysis product. Despite the fact that the HCl is unresolved in the sequence pyrograms, its yields can be calculated from the areas of its SIC peaks, and on this basis the first order rate constant for HCl evolution (k_HCl) was calculated as 0.095 s⁻¹ at 387°C. This high value for HCl formation shows that this process must be contributing significantly to the fast overall rate. SIC curves for a wide range of other possible degradation products were examined, and these revealed that monomeric and linear dimeric-type products from polychloroprene are also produced with fast rates (k_mon=0.090 s⁻¹ and k_dim=0.113 s⁻¹ respectively). The formation of such products with specific rates which are identical (within experimental uncertainty) with that for HCl evolution, suggests that the loss of HCl molecules is associated with the loss of monomer and dimer molecules. The cumulative yield curves for HCl, monomeric, and linear dimeric products indicated that their total limiting yield was approx. 50% of the total products, which is close to the estimate of 60% for fast products based on the kinetic analysis of the overall yield. The overall rate constant for the formation of products by slow processes was then estimated from data obtained by subtracting the yields for the fast products from the total yield. (These slow products include a wide range of chlorohydrocarbons and some hydrocarbons.) The value was found to be k_slow=0.025 s⁻¹, which may be compared with the overall Phase 2 (slow) value k₂=0.013 s⁻¹, above. New overall rate data were then obtained from sequential pyrolyses performed in similar pyrolysis–GC equipment, but using an FID detector. On kinetic analysis a value for the rate constant was obtained (0.016 s⁻¹), which compares well with the low value for Stage 2 of the overall rate as measured by MS. However, the FID results also showed that there are also some products formed by a fast rate. Although the magnitude of this could not be measured, it was possible to estimate from the FID results that the total yield of products formed by the fast rate was ca. 10%, which is of the same order of magnitude as the yield of monomeric and dimeric products detected by MS analysis. The differences between the FID kinetic results and those from MS can be understood if it is borne in mind that the FID detector is expected to be insensitive to HCl, an important fast product, but it can detect monomer and dimeric products. Resolved pyrolysis chromatograms allowed approximate values of the ratios of the yields of the different oligomeric species to be estimated. This information allowed the calculation of the ratio of the total number of molecules of HCl evolved to the total number of units of chloroprene in the sample. This ratio was found to be much greater than the fraction of 1,2 chloroprene units in the polymer, showing that although all of these sites could be yielding HCl, an important part of the dehydochlorination is occurring by an alternative mechanism. One possibility is a process involving a concerted, or in some way associated, loss of a hydrogen chloride and a monomer molecule. On the basis of the above evidence it is concluded that the fast process could be a depropagation reaction in which there are intramolecular transfer reactions producing dimer during the unzip. Associated assumptions are that there are a limited number of initiation sites for this depropagation process, and that about half of the monomer molecules release HCl at their moment of unzip. Possible evidence for this was obtained from the observation of substantial yields of dehydrochlorinated monomer. It is also proposed that the slow process could involve random scissions, which would be expected to produce a distribution of oligomers, including some monomer. Superimposed on all of this are secondary reactions, possible examples of which are the combination of monomer with itself to form cyclic dimers, and the combination of various molecules with HCl.     

Literatur

Analytical and Bioanalytical Chemistry -     

Gamma radiation induced effects on silica and on silica-polymer interfacial interactions in filled polysiloxane rubber

We report in our studies to assess the impact of gamma radiation on silica and on the silica-polymer interface in filled polysiloxane rubber. Electron spin resonance (ESR) and solid-state nuclear magnetic resonance (NMR) studies have been performed on samples exposed to gamma radiation. In an effort to probe directly the effect of gamma radiation on the silica surface, we employed ¹H and ²⁹Si NMR. Our ESR studies show trapped paramagnetic species (positive holes and/or trapped electrons) within the host silica matrix for all samples exposed to gamma radiation. A sample of pure cab-o-sil irradiated to a dose of 50 kGy also shows an ESR signal. Our studies on real-time aged samples (derived from field trials) also show ESR signatures indicative of silica based trapped paramagnetic species. The growth of trapped paramagnetic species as a function of gamma dose was investigated. This shows that the build up of trapped species occurs rapidly at low gamma dose before reaching saturation at about 20-30 kGy. Radiation induced band gap excitation is the likely process leading to the creation of these paramagnetic species which may be trapped in regions of local charge deficit within the silica matrix. Species that are not trapped may take part in silica surface reactions leading to changes in filler-polymer interfacial interactions. NMR studies combined with ammonia modified swell studies have shown increased polymer segmental chain mobility (softening) at low gamma dose indicative of a possible reduction in filler-polymer interfacial interactions. For those samples exposed to high gamma dose, our ammonia modified swell studies suggest increased polymer-filler interactions presumably through silica-polymer crosslinking effects. Our ¹H and ²⁹Si NMR studies on irradiated silica suggest that the silica surface is sensitive to gamma radiation. Our observations are important as they highlight the need to better control the quality (size, purity, etc.) of the silica constituent in filled polymer components used in gamma radiation environments.     

Incorporation of Effects of Diffusion into Advection-Mediated Dispersion in Porous Media

The distribution of solute arrival times, W(t;x), at position x in disordered porous media does not generally follow Gaussian statistics. A previous publication determined W(t;x) in the absence of diffusion from a synthesis of critical path, percolation scaling, and cluster statistics of percolation. In that publication, W(t;x) as obtained from theory, was compared with simulations in the particular case of advective solute transport through a two-dimensional model porous medium at the percolation threshold for various lengths x. The simulations also did not include the effects of diffusion. Our prediction was apparently verified. In the current work we present numerical results related to moments of W(x;t), the spatial solute distribution at arbitrary time, and extend the theory to consider effects of molecular diffusion in an asymptotic sense for large Peclet numbers, P_e. However, results for the scaling of the dispersion coefficient in the range 1<P_e<100 agree with those of other authors, while results for the dispersivity as a function of spatial scale also appear to explain experiment.     

1H-NMR relaxation times and water content of red blood cells from chronic alcoholic patients during withdrawal

Red blood cell proton nmr, T1 and T2 times, and water content were measured for normal control subjects and thirteen patients with chronic alcoholism during the withdrawal phase. T1 and T2 were significantly increased without significant alteration in cell water content. The relaxation times were more markedly affected in those with symptoms of delirium tremens. These findings suggest that the intracellular free:bound water states rather than water content is the more likely explanation for these changes. The results are discussed in relation to similar findings obtained from in vivo studies in man and in vitro studies in animals.     

How Ubiquitin Unfolds after Transfer into the Gas Phase

The structural evolution of ubiquitin after transfer into the gas phase was studied by electron capture dissociation. Site-specific fragment yields show that ubiquitin’s solution fold is overall unstable in the gas phase, but unfolding caused by loss of solvent is slowest in regions stabilized by salt bridges.