The 2'-deoxyadenosine-5'-phosphate anion, the analogous radical, and the different hydrogen-abstracted radical anions: molecular structures and effects on DNA damage

The 2'-deoxyadenosine-5'-phosphate (5'-dAMP) anion and its related radicals have been studied by reliably calibrated theoretical approaches. This study reveals important physical characteristics of 5'-dAMP radical related processes. One-electron oxidation of the 5'-dAMP anion is found on both the phosphoryl group and the adenine base with electron detachment energies close to that of phosphate. Partial removal of electron density from the adenine fragment leads to an extended pi system which includes the amine group of the adenine. Although the radical-centered carbon increases the extent of bonding with its adjacent atoms, it usually weakens the chemical bonds between the atoms at the alpha- and beta-positions. This tendency should be important in predicting the reactivity of the sugar-based radicals. The overall stability sequence of the H-abstracted 5'-dAMP anionic radicals is consistent with the analogous results for the H-abstracted neutral radicals of the adenosine nucleoside: aliphatic radicals > aromatic radicals. The negatively charged phosphoryl group attached to atom C(5)' of the ribose does not change this energetic sequence. All the H-abstraction produced 5'-dAMP radical anions are distonic radical anions. Studies have shown that the charge-radical-separating feature of the distonic radical anions is biologically relevant. This result should be important in understanding the reactive properties of these H-abstraction-produced anion radicals.     

The dichotomy of dimetallocenes: coaxial versus perpendicular dimetal units in sandwich compounds

Theoretical studies of the dimetallocene (eta5-C5H5)2Zn2 lead to optimized D5h or D5d structures in which the Zn-Zn bond is coaxial with the C5 axes of the two Cp rings, with a Zn-Zn distance of 2.33 A, corresponding to a Zn-Zn single bond. (eta5-C5H5)2Ni2 (singlet state) and (eta5-C5H5)2Cu2 (triplet) have similar structures with a NiNi triple bond (2.06 A) and a Cu=Cu double bond (2.22 A). However, DFT computations on (C5H5)2Ni2 and (C5H5)2Cu2 (both singlet states) lead to a totally different type of optimized structure (Ci symmetry) lying at significantly lower energies, with the metal-metal bonds perpendicular to the C5 axes of the Cp rings.     

Broadband square-pulse operation of a passively mode-locked fiber laser for fiber Bragg grating interrogation

A long-cavity, passively mode-locked erbium fiber laser operated in the square-pulse regime is demonstrated as a useful light source for interrogating fiber Bragg grating arrays. Output pulses with 4-W peak-power, 10-ns pulse widths, and bandwidths greater than 60nm were used successfully to interrogate 2% fiber Bragg gratings.     

Subsurface defect detection in ceramics by high-speed high-resolution optical coherent tomography

We use optical coherence tomography with a new configuration to determine the size and location of subsurface defects in solid ceramic and composite ceramic materials. Cross-sectional subsurface regions either parallel or perpendicular to the surface were examined. We present experimental results showing that the size and distribution of small subsurface defects can be determined with depth and lateral resolutions of 10 and 4 microm, respectively.     

Chemoselective and stereoselective addition of organocuprates to α-oxoketene dithioacetals

The chemoselective and stereoselective addition of organocuprates to cyclic α-oxoketene dithioacetals affords predominately the $\text{E}$ vinylogous thioesters. An acyclic α-oxoketene dithioacetals affords the $\text{Z}$ vinylogous thioester stereoselectively. The observed selectivities are dependent upon substrate structure and the organocopper reagent.     

Selectfluor as a nucleofuge in the reactions of azabicyclo[n.2.1]alkane beta-halocarbamic acid esters (n = 2,3)

The ability of Selectfluor to act as a nucleofuge for hydrolysis of beta-anti-halides was investigated with N-alkoxycarbonyl derivatives of 6-anti-Y-7-anti-X-2-azabicyclo[2.2.1]heptanes and 4-anti-Y-8-anti-X-6-azabicyclo[3.2.1]octanes. The azabicycles contained X = I or Br groups in the methano bridge and Y = F, Br, Cl, or OH substituents in the larger bridge. The relative reactivities of the halides were a function of the azabicycle, the halide, and its bridge and the addition of Selectfluor or HgF(2) as a nucleofuge. All halide displacements occurred with retention of stereochemistry. Selectfluor with sodium bromide or sodium chloride, but not sodium iodide, competitively oxidized some haloalcohols to haloketones. A significant 15.6 Hz F...HO NMR coupling was observed with 4-anti-fluoro-8-anti-hydroxy-6-azabicyclo[3.2.1]octane.     

Evidence for through-space electron transfer in the distance dependence of normal and inverted electron transfer in oligoproline arrays

Four new helical oligoproline assemblies containing 16, 17, 18, and 19 proline residues and ordered arrays of a Ru(II)-bipyridyl chromophore and a phenothiazine electron-transfer donor have been synthesized in a modular fashion by solid-phase peptide synthesis. These arrays are illustrated and abbreviated as CH(3)CO-Pro(6)-Pra(PTZ)-Pro(n)()-Pra(Ru(II)b(2)m)(2+)-Pro(6)-NH(2), where PTZ is 3-(10H-phenothiazine-10)propanoyl and (Ru(II)b'(2)m)(2+) is bis(4,4'-diethylamide-2,2'-bipyridine)(4-methyl,4'-carboxylate,2,2'-bipyridine)ruthenium(II) dication with n = 2 (2), 3 (3), 4 (4), and 5 (5). They contain PTZ as an electron-transfer donor and (Ru(II)b'(2)m)(2+) as a metal-to-ligand charge transfer (MLCT) light absorber and are separated by proline-to-proline through-space distances ranging from 0 (n = 2) to 12.9 A (n = 5) relative to the n = 2 case. They exist in the proline-II helix form in water, as shown by circular dichroism measurements. Following laser flash Ru(II) --> b'(2)m MLCT excitation at 460 nm in water, excited-state PTZ --> Ru(2+) quenching (k(2)) occurs by reductive electron transfer, followed by Ru(+) --> PTZ(+) back electron transfer (k(3)), as shown by transient absorption and emission measurements in water at 25 degrees C. Quenching with DeltaG degrees = -0.1 eV is an activated process, while back electron transfer occurs in the inverted region, DeltaG degrees = -1.8 eV, and is activationless, as shown by temperature dependence measurements. Coincidentally, both reactions have comparable distance dependences, with k(2)( )()varying from = 1.9 x 10(9) (n = 2) to 2.2 x 10(6) s(-)(1) (n = 4) and k(3) from approximately 2.0 x 10(9) (n = 2) to 2.2 x 10(6) s(-)(1) (n = 4). For both series there is a rate constant enhancement of approximately 10 for n = 5 compared to n = 4 and a linear decrease in ln k with the through-space separation distance, pointing to a significant and probably dominant through-space component to intrahelical electron transfer.