Highly-integrated lab-on-chip system for point-of-care multiparameter analysis

A novel innovative approach towards a marketable lab-on-chip system for point-of-care in vitro diagnostics is reported. In a consortium of seven Fraunhofer Institutes a lab-on-chip system called "Fraunhofer ivD-platform" has been established which opens up the possibility for an on-site analysis at low costs. The system features a high degree of modularity and integration. Modularity allows the adaption of common and established assay types of various formats. Integration lets the system move from the laboratory to the point-of-need. By making use of the microarray format the lab-on-chip system also addresses new trends in biomedicine. Research topics such as personalized medicine or companion diagnostics show that multiparameter analyses are an added value for diagnostics, therapy as well as therapy control. These goals are addressed with a low-cost and self-contained cartridge, since reagents, microfluidic actuators and various sensors are integrated within the cartridge. In combination with a fully automated instrumentation (read-out and processing unit) a diagnostic assay can be performed in about 15 min. Via a user-friendly interface the read-out unit itself performs the assay protocol, data acquisition and data analysis. So far, example assays for nucleic acids (detection of different pathogens) and protein markers (such as CRP and PSA) have been established using an electrochemical read-out based on redoxcycling or an optical read-out based on total internal reflectance fluorescence (TIRF). It could be shown that the assay performance within the cartridge is similar to that found for the same assay in a microtiter plate. Furthermore, recent developments are the integration of sample preparation and polymerase chain reaction (PCR) on-chip. Hence, the instrument is capable of providing heating-and-cooling cycles necessary for DNA-amplification. In addition to scientific aspects also the production of such a lab-on-chip system was part of the development since this heavily affects the success of a later market launch. In summary, the Fraunhofer ivD-platform covers the whole value chain ranging from microfluidics, material and polymer sciences, assay and sensor development to the production and assembly design. In this consortium the gap between diagnostic needs and available technologies can be closed.     

Structural Effects of Cu/Zn Substitution in the Malachite–Rosasite System

Synthetic zincian malachite samples (Cu_1–xZn_x)₂(OH)₂CO₃ with x = 0, 0.1, 0.2 and 0.3 were characterized by powder X‐ray diffraction and optical spectroscopy. The XRD patterns of the samples up to x = 0.2 indicate single phase materials with an approximately linear dependence of the refined lattice parameters on the zinc content. In contrast, the sample with a nominal zinc content x = 0.3 shows the formation of a small amount of aurichalcite (Zn,Cu)₅(OH)₆(CO₃)₂ as an additional phase. Based on the lattice parameter variations, the zinc content of the zincian malachite component in this sample is estimated to be x ≈? 0.27, which seems to represent the maximum possible substitution in zincian malachite under the synthesis conditions applied. The results are discussed in relation to preparation of Cu/ZnO catalysts and the crystal structures of the minerals malachite and rosasite. One striking difference between these two structurally closely related phases is the orientation of the Jahn–Teller elongated axes of the CuO₆ octahedra in the unit cell, which seems to be correlated with the placement of the monoclinic β angle. The structural and chemical relationship between these crystallographically distinct phases is discussed using a hypothetical intermediate Zn₂(OH)₂CO₃ phase of higher orthorhombic symmetry. In addition to the crystallographic analysis, optical spectroscopy proves to be a useful tool for estimation of the Cu:Zn ratio in (Cu_1–xZn_x)₂(OH)₂CO₃ samples.     

Ordered arrays of epitaxial silicon nanowires produced by nanosphere lithography and chemical vapor deposition

Gold dot arrays on (1 1 1) Si substrates obtained through nanosphere lithography (NSL) combined with sputtering and annealing in Ar at 1000 °C are used to catalyze vapor liquid solid (VLS) epitaxial growth of silicon nanowires (Si NWs) using chemical vapor deposition (CVD) with SiH₄ in Ar. The NWs grow primarily epitaxially on the underlying (1 1 1) Si wafer following the four independent 〈1 1 1〉 directions. The diameter distribution of the wires reflects the diameter distribution of the catalyst gold dot arrays and is therefore predictable. The wire length depends on the size of the gold catalyst for the same CVD parameters. The wire position is foreseeable within the limits of the pattern geometrical quality, but one-to-one growth of NWs to gold dots is not always observed, probably due to (very locally) the remaining presence of silicon oxide. Overall, this inexpensive patterning method for obtaining high-quality crystalline VLS Si NWs by CVD fulfills the requirements of many device applications, where patterning control, quality and reproducibility of the nanostructures are crucial.     

Selective chemical imaging of static actin in live cells

We have characterized rationally designed and optimized analogues of the actin-stabilizing natural products jasplakinolide and chondramide C. Efficient actin staining was achieved in fixed permeabilized and non-permeabilized cells using different combinations of dye and linker length, thus highlighting the degree of molecular flexibility of the natural product scaffold. Investigations into synthetically accessible, non-toxic analogues have led to the characterization of a powerful cell-permeable probe to selectively image static, long-lived actin filaments against dynamic F-actin and monomeric G-actin populations in live cells, with negligible disruption of rapid actin dynamics.     

Fabrication and characterization of biocompatible nacre-like structures from α-zirconium hydrogen phosphate hydrate and chitosan

Composite materials with an ordered layered structure resembling that of nacre were fabricated by layer-by-layer assembly making use of presynthesized α-zirconium hydrogenphosphate hydrate (ZrP) platelets and chitosan. These two biocompatible materials were chosen in view of possible applications in the biomedical field, e.g., as bone or joint replacement implants. The effect of different concentrations of the inorganic ZrP platelets and the organic components (chitosan) on the composite assembly and structure was investigated. A high concentration of chitosan (0.1 wt.%) resulted in a misalignment of the inorganic platelets, while at very low concentrations (0.001 wt.%), the substrate was not fully covered by the polymer, again leading to misalignment. Also, the concentration of the α-ZrP platelets affected the composite assembly and structure. The number of dipping cycles was varied between 70 and 220, yielding a maximum thickness of approximately 6 μm. The pH value of the chitosan solution was also varied to investigate its influence on the composite assembly. The mechanical properties of the composites were tested with a nanoindenter. For samples prepared with the same number of dipping cycles, higher values of Young's modulus and hardness were obtained with improved alignment of the platelets in the samples. For samples prepared with 220 dipping cycles, a Young's modulus of 2.6 GPa and a hardness of 70 MPa were observed. Important general relationships are recognized between the preparation parameters, the degree of order within the nacre-like films and the resulting mechanical properties.     

Finding blocks and other patterns in a random coloring of ℤ

Let ξ = (ξ_k)_k∈? be i.i.d. with P(ξ_k = 0) = P(ξ_k = 1) = 1/2, and let S: = (S_k) be a symmetric random walk with holding on ?, independent of ξ. We consider the scenery ξ observed along the random walk path S, namely, the process (χ_k := ξ). With high probability, we reconstruct the color and the length of blockⁿ, a block in ξ of length ≥ n close to the origin, given only the observations (χ_k). We find stopping times that stop the random walker with high probability at particular places of the scenery, namely on blockⁿ and in the interval [?3ⁿ,3ⁿ]. Moreover, we reconstruct with high probability a piece of ξ of length of the order 3 around blockⁿ, given only 3 observations collected by the random walker starting on the boundary of blockⁿ. © 2005 Wiley Periodicals, Inc. Random Struct. Alg., 2006     

Reconstructing a random scenery observed with random errors along a random walk path

 We show that an i.i.d. uniformly colored scenery on ℤ observed along a random walk path with bounded jumps can still be reconstructed if there are some errors in the observations. We assume the random walk is recurrent and can reach every point with positive probability. At time k, the random walker observes the color at her present location with probability 1−δ and an error Y _k with probability δ. The errors Y _k , k≥0, are assumed to be stationary and ergodic and independent of scenery and random walk. If the number of colors is strictly larger than the number of possible jumps for the random walk and δ is sufficiently small, then almost all sceneries can be almost surely reconstructed up to translations and reflections. Received: 3 February 2002 / Revised version: 15 January 2003 Published online: 28 March 2003 Mathematics Subject Classification (2000): 60K37, 60G50 Key words or phrases:Scenery reconstruction – Random walk – Coin tossing problems