A new approach for the investigation of isoprenoid biosynthesis featuring pathway switching,deuterium hyperlabeling,and 1H NMR spectroscopy. The reaction mechanism of a novel streptomyces diterpene cyclase

Recent methodology for the investigation of isoprenoid biosynthesis featuring pathway switching and hyperdeuteration has shown significant advantages in elucidating the reaction mechanism of a novel Streptomyces diterpene cyclase with use of precise atom-level analysis. Insight into the cyclization mechanism involved in the conversion of geranylgeranyl diphosphate (GGPP) into a clerodane hydrocarbon terpentetriene was obtained by heterologous expression in doubly engineered Streptomyces lividans of a diterpene cyclase gene derived from Streptomyces griseolosporeus, a producer of an unique diterpenoid cytotoxic antibiotic terpentecin, and by in vivo labeling with mevalonate-d(9). The cyclization involved electrophilic protonation, cationic ring closure, Wagner-Meerwein-type rearrangements, and deprotonation. A key feature was that the labeled metabolite as a mixture of predominantly deuterated mosaic molecules provided sufficient information that close analysis of the labeling pattern for each individual isoprene unit was achieved primarily by (1)H NMR spectroscopy. The cyclization of GGPP into the clerodane skeleton catalyzed by the cyclase appears to involve Si-face specific protonation, intermediates with A/B chair-boat conformation, and specific methyl and hydride migrations to give an intermediary C-4 carbocation. Subsequent collapse of the cation through specific removal of the initiating proton and final elimination of diphosphate gives rise to the terpentetriene hydrocarbon.     

Postadministration Protective Effect of Magnesium-L-ascorbyl-phosphate on the Development of UVB-induced Cutaneous Damage in Mice

The effects of stable vitamin C, magnesium-L-ascorbyl-2-phosphate (MAP), administered after acute and chronic exposure to UVB irradiation were investigated using hairless mice. Intraperitoneal administration of 100 mg/kg of MAP immediately after acute exposure to 15 kJ/m² of UVB significantly prevented increases of UVB-induced lipid peroxidation in skin and sialic acid in serum, an inflammation marker. Administration of 50 mg/kg of MAP immediately after each exposure significantly delayed skin tumor formation and hyperplasia induced by chronic exposure to 2 kJ/m² of UVB. Intraperitoneal administration of 200 mg/kg of MAP produced an increase in ascorbic acid (As) levels in the serum, liver and skin within 15 min. Serum As levels quickly returned to normal, but hepatic and cutaneous levels remained elevated before returning to normal after 24 h, suggesting that MAP was converted to As in the serum and in those tissues. Ultraviolet B-induced hydroxyl radical generation in murine skin homogenates was scavenged by As-Na addition, which was directly detected by electron spin resonance (ESR). These results suggest that postadministration of MAP delays progression of skin damage induced by UVB irradiation. It is presumed that MAP, once converted to As, exhibits such inhibitory effects by scavenging hydroxyl and lipid radicals generated as a direct or indirect result of UVB exposure.     

Portable system for near-real time measurement of gaseous formaldehyde by means of parallel scrubber stopped-flow absorptiometry

Formaldehyde, HCHO, is one of the important causal agents of sick-building syndrome. It is also an important product of ambient air photochemistry. We report here a portable instrument capable of a 0.08 ppbv limit of detection (LOD) and a time resolution of 5 min that is useful for both indoor and ambient air applications. The detection is based on efficient gas collection and chromogenic reaction with 3-methyl-2-benzothiazolone hydrazone (MBTH) through a pair of alternately sampling small-bore porous-membrane tube diffusion scrubbers (DS). The chemistry is well established, requires no special reagent preparation or elevated reaction temperatures and permits the use of inexpensive light emitting diode (LED)-based detectors without need for long path cells. Stopped flow alternate sampling allows an HCHO collection performance, an order of magnitude better than any previous system with high throughput and high sensitivity. Results for indoor and ambient air analyses are presented.     

A new family of glucose-1-phosphate/glucosamine-1-phosphate nucleotidylyltransferase in the biosynthetic pathways for antibiotics

Aminoglycoside antibiotics are composed of aminosugars and a unique aminocyclitol aglycon including 2-deoxystreptamine (DOS), streptidine, actinamine, etc., and nucleotidylyltransferases, sugar modifying enzymes, and glycosyltransferases appear to be essential for their biosynthesis. However, the genes encoding those enzymes were unable to be identified by a standard homology search in the butirosin biosynthetic btr gene cluster, except that the btrM gene appeared to be a glycosyltransfease. Disruption studies of the btrD gene indicated that BtrD was involved in the supply of a glycosyl donor immediately prior to the glycosylation of DOS giving paromamine. As anticipated, BtrD expressed in Escherichia coli was able to catalyze UDP-D-glucosamine formation from D-glucosamine-1-phosphate and UTP. Both dTTP and UTP were good NTP substrates, and D-glucose-1-phosphate and D-glucosamine-1-phosphate were good sugar phosphates for the enzyme reaction. This finding is the first to identify an enzyme which activates a sugar donor in the DOS-containing antibiotics. Interestingly, BtrD homologues have been reported as functionally unknown open reading frames (ORFs) in the biosynthetic gene clusters for several antibiotics including teicoplanin, balhimycin, chloroeremomycin, and mitomycin C. It appears therefore that gene clusters for antibiotic biosynthesis provide their own nucleotidylyltransferases, and the BtrD homologues are among the secondary metabolism specific enzymes.     

Numerical analysis of 3D vortical cavity flow

The vortical flows of an incompressible fluid in a rectangular three-dimensional container with a large spanwise aspect ratio driven by a moving solid lid are studied using a combined compact finite difference (CCD) scheme with high accuracy and high resolution. The study focuses on the change of the steady flow structures in the cavity with Reynolds numbers ranging from 100 to 850. The results of the flow in the cavity with a spanwise aspect ratio 6.55 show that several stable closed streamlines localized near the symmetric plane are found at Re ≥500, while a closed stable streamline is found near the side wall at Re ≤300. The change of the flow pattern present in this system affects the diffusion properties in the flow but seems to have no qualitative effect on the global flow properties which include energy dissipation in the cavity. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Synthesis of nanocylinders consisting of graft block copolymers by the photo‐induced ATRP technique

Photoinduced atom transfer radical polymerizations (ATRP) of t‐butyl methacrylate (BMA) were carried out, initiated by model initiator benzyl N,N‐diethyldithiocarbamate (BDC) in the presence of CuCl/bipyridine (bpy) under UV irradiation. We performed the first‐order time‐conversion plots in this polymerization system, and the straight line in the semilogarithmic coordinates indicated a first‐order in the monomer. The molecular weight of poly(t‐butyl methacrylate) (PBMA) increased in direct proportion to monomer conversion. The molecular weight distribution (M_w/M_n) of PBMA was about 1.3. The initiator efficiency, f, was close to 1.0, which indicated that no side reactions occurred. A copper complex, CuCl/bpy, reversibly activated the dormant polymer chains via a N,N‐diethyldithiocarbamate (DC) transfer reaction such as Cu(DC)Cl/bpy, and it was dynamic equilibrium that was responsible for the controlled behavior of the polymerization of BMA. On the basis of this information, we established a preparation method of nanocylinders consisting of graft block copolymers by grafting from photoinduced ATRP of multifunctional polystyrene having DC pendant groups with vinyl monomers [first monomer, BMA; second monomer, styrene or methyl methcrylate (MMA)]. We have carried out the characterization of such nanocylinders in detail. © 2004 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43: 63–70, 2005     

The relationship between crystal structure and electrical conductivity in the LaY1−xInxO3 (x=0.0–0.7) system

The electrical conductivity of the LaY_1−xIn_xO₃ (x=0.0–0.7) system has been studied from the viewpoint of crystal chemistry. The high temperature form of LaYO₃ (x=0.0) was ascertained to be the Sm₂O₃-type (B-type rare earth) structure, not perovskite-type one. The X-ray diffraction (XRD) experiments revealed that the samples with x=0.05 and 0.10 were the mixed phase of Sm₂O₃-type and perovskite-type structure, and changed to perovskite phase in the range of x0.20. From oxygen partial pressure dependence of the electrical conductivity, it was found that both the Sm₂O₃-type and the perovskite-type single phases showed hole conduction, but the mixed phase did oxide-ion one. The electrical conductivity of the LaY_1−xIn_xO₃ (x=0.0–0.7) system increased with increasing x, and showed the maximum value in the range of x=0.05–0.10, and then decreased with increasing x. The occurrence of oxide-ion conduction was discussed from the viewpoint of lattice distortion in the mixed phase.     

Portable flow-injection analyzer for nitrite and nitrate in natural water.

A portable flow-injection analyzer with solid-state spectrophotometric detection for the determination of nitrite and nitrate is described. It utilizes the Griess-Saltzman reaction. The instrument comprises a two-channel peristaltic pump, two six-port injection valves and a mini cadmium column between them. The sample loops were connected serially. The detection limits of the method were less than 7 microg l(-1) for NO2- and 10 microg l(-1) for NO3-.     

Echolocation and flight strategy of Japanese house bats during natural foraging, revealed by a microphone array system

Using only a microphone array system, echolocation pulses and three-dimensional flight paths in the frequency-modulated bat, Pipistrellus abramus, during natural foraging, were simultaneously examined. During the search phase, the inter-pulse interval, pulse duration, and moving distance of the bat between successive emissions were relatively constant at around 89.5 ± 18.7 ms, 6.90 ± 1.31 ms, and 0.50 ± 0.20 m, respectively. The bats started to decrease these acoustical parameters within 2-3 m of the prey capture point. For every emission along a flight path, the distance between a bat and its prey capture point was calculated as both direct distance to capture (DDC), which corresponded to the target distance, and flight distance to capture (FDC) along the flight path. The DDC matched the FDC after the start of the approach phase, indicating that foraging bats followed a straight-ahead path to the target. In addition, the duration of the quasi-constant frequency component of emitted pulses was slightly extended just before the convergence of the DDC with the FDC. These findings suggest that the bats confirm the presence of target prey by extending the duration of the pulse and then select a straight-ahead approach by forecasting the movement of the prey.     

Relationship between oxide-ion conductivity and dielectric relaxation in the Ln2Zr2O7 system having pyrochore-type compositions (Ln=Yb, Y, Gd, Eu, Sm, Nd, La)

Ln₂Zr₂O₇ (Ln=Yb, Y, Gd, Eu, Sm, Nd, La) system changed from fluorite (F)-type to pyrochlore (P)-type phases when the ionic radius ratios, r(Ln³⁺)/r(Zr⁴⁺), were larger than 1.26. The oxide-ion conductivity showed sharp maximum at the vicinity of the phase boundary between the F- and P-type phases. The frequency dependence of dielectric constant () and dielectric loss factor () were successfully explained by the superimposition of Debye-type polarization due to dopant-vacancy associate and electrode-electrolyte interfacial polarization by the numerical calculation. The peak of dielectric loss tangent (tan δ) was ascribed to the dopant-vacancy associate. The ε_r(0) and dielectric constant of the associate (ε_r0) showed also the maximum values at the vicinity of the phase boundary between the F- and P-type phases.