Lithiation at the 6-position of uridine with lithium hexamethyldisilazide: crucial role of temporary silylation

Lithium hexamethyldisilazide (LiHMDS) can mediate silylation at the 6-position of uridine, although LiHMDS alone is not able to generate the C-6-lithiated uridine. Experimental results showed that temporary silylation of O-4 (or N-3) of the uracil ring triggers the C-6 lithiation with LiHMDS. This finding allowed us to develop an efficient intramolecular alkylation of 5'-deoxy-5'-iodouridine to furnish 6,5'-C-cyclouridine. [reaction--see text]     

Structural investigation of zeolite-templated, ordered microporous carbon by scanning tunneling microscopy and Raman spectroscopy

Scanning tunneling microscopy (STM) and Raman spectroscopy have been employed for a detailed structural characterization of an ordered microporous carbon synthesized in the nanochannels of zeolite Y by a templating approach. The carbon exhibited an exceptionally high adsorption capacity together with a long-range structural organization on the nanometer scale. As revealed by STM, this material exhibited both terrace-like and periodic (approximately 1.4 nm) stripe-like nanostructures. The vertical separation between contiguous terraces was measured to be also about 1.4 nm and was thus coincident with the structural periodicity deduced by X-ray diffraction. The terraces of the carbon material were shown to consist of arrays of approximately 1 nm wide carbon clusters. The carbon clusters displayed only a limited degree of local order within the terraces but not long-range periodicity. Likewise, STM indicated that the micropore structure of this carbon originated from the large number of voids that separate adjacent clusters, being morphologically very different from that commonly found in activated carbons. The range of void sizes measured by STM (0.8-2.3 nm) was in complete agreement with the pore size distribution determined from nitrogen adsorption measurements. The origin of the nanostructural features observed for this microporous carbon was discussed on the basis of the surface structure of the zeolite Y template. Finally, Raman spectroscopy provided evidence that the carbon clusters were made up of nanographenes with a curved topology.     

Automated DNA fragment collection by capillary array gel electrophoresis in search of differentially expressed genes

An automatic DNA fragment collector using capillary array gel electrophoresis has been developed. A sheath flow technique is used for not only detection but also collection of DNA fragments. In a sheath flow cell, the DNA fragments separated by 16 capillaries flow independently into corresponding sampling capillaries. The fraction collector consists of 16 sampling trays and each sampling tray is set beneath each end of the sampling capillaries to collect the flow-through DNA fragments. Certain DNA fragments are automatically sorted by controlling the movement of the sampling trays according to the signals from the system. The collector experimentally separated two mixtures of polymerase chain reaction (PCR) products: one prepared by using eight different sizes (base lengths from 161 to 562) of DNAs; and the other prepared by a differential display (DD) method with cDNA fragments. Collected DNA fragments are amplified by PCR and measured by electrophoresis. DNA fragments with base length differences of one (base lengths 363 and 364) were successfully separated. A separated DNA fragment from the DD sample was also successfully sequenced. In addition, differentially expressed DNA fragments were automatically sorted by comparative analysis, in which two similar cDNA fragment groups, labeled by two different fluorophores, respectively, were analyzed in the same gel-filled capillary. These results show that the automatic DNA fragment collector is useful for gene hunting in research fields such as drug discovery and DNA diagnostics.     

Thermotropic liquid-crystalline peptide derivatives: oligo(glutamic acid)s forming hydrogen-bonded columns

We report on new thermotropic liquid-crystalline oligo(amino acid) derivatives forming columnar structures. These are based on branched oligo(glutamic acid)s and 2-(3,4-dialkyloxyphenyl)ethyl moieties. An oligo(glutamic acid) derivative, alpha,gamma-bis(L-glutamoyl) L-glutamic acid tetra[2-(3,4-dioctadecyloxyphenyl)ethyl]ester, shows a hexagonal columnar phase, whilst a glutamic acid derivative, alpha,gamma-bis[2-(3,4-dioctadecyloxyphenyl)ethyl] L-glutamate, does not show a mesophase. Hydrogen bonds formed by the oligo(glutamic acid) moieties should contribute to the induction of the columnar liquid-crystalline properties. In addition, we have examined the effects of the molecular chirality of the oligo(glutamic acid) parts and the functionalisation at the focal position of the taper shaped molecules on the liquid-crystalline properties of the compounds.     

Incorporation of porphyrins into mesopores of MCM-41

To introduce porphyrins such as the alcoholic-hydroxyl-group-appended free base porphyrin derivative (HP) of 5-[4-(3-hydroxylpropyloxycabonyl)phenyl]-10,15,20-triphenylphorphine into mesopores of MCM-41, samples were treated with 0-4.0 mmol dm-3 HP toluene solutions and the materials obtained were characterized by various means. The framework structure of MCM-41 was not altered by the treatment. With increasing HP concentration, the specific surface area and pore size decreased; in contrast, the number of HP molecules in the material increased almost linearly from 0 to 0.17 groups nm-2. These facts reveal that the HP molecules are incorporated into mesopores of MCM-41. IR results indicated that the hydroxyl group of the HP molecule reacts with surface free SiOH groups of the MCM-41 by a dehydration reaction. Diffuse reflection UV-vis spectra of the HP-introduced material were almost the same as that of pure HP molecules. The Beers plot suggested that the HP molecules in the material are dispersed at an HP concentration less than 1.0 mmol dm-3, and above that concentration, aggregation or flattening of the HP molecules on the MCM-41 surface takes place.     

Micellization of non-surface-active diblock copolymers in water. Special characteristics of poly(styrene)-block-poly(styrenesulfonate)

Strongly ionized amphiphilic diblock copolymers of poly(styrene)-b-poly(styrenesulfonate) with various hydrophilic and hydrophobic chain lengths were synthesized by living radical polymerization, and their properties and self-assembling behavior were systematically investigated by surface tension measurement, foam formation, hydrophobic dye solubilization, X-ray reflectivity, dynamic light scattering, small-angle neutron scattering, small-angle X-ray scattering, and atomic force microscope techniques. These copolymer solutions in pure water did not show a decrease of surface tension with increasing polymer concentration. The solutions also did not show foam formation, and no adsorption at the air/water interface was confirmed by reflectivity experiments. However, in 0.5 M NaCl aq solutions polymer adsorption and foam formation were observed. The critical micelle concentration (cmc) was observed by the dye solubilization experiment in both the solutions with and without added salt, and by dynamic light scattering we confirmed the existence of polymer micelles in solution, even though there was no adsorption of polymer molecules at the water surface in the solution without salt. By the small-angle scattering technique, we confirmed that the micelles have a well-defined core-shell structure and their sizes were 100-150 A depending on the hydrophobic and hydrophilic chain length ratio. The micelle size and shape were unaffected by addition of up to 0.5 M salt. The absence of polymer adsorption at the water surface with micelle formation in a bulk solution, which is now known as a universal characteristic for strongly ionized amphiphilic block copolymers, was attributed to the image charge effect at the air/water interface due to the many charges on the hydrophilic segment.     

Hydrophilic chain length dependence of the ionic amphiphilic polymer monolayer structure at the air/water interface

Detailed analysis of an interesting poly(methacrylic acid) (PMAA) brush structure in water of a diblock copolymer [(Et(2)SB(m)-b-(MMA)(n), where Et(2)SB is diethylsilacyclobutane] monolayer reported previously was performed by X-ray and neutron reflectometry and indicated that the hydrophilic layer formed with a relatively long PMAA chain is not a simple layer but is divided into two layers, that is, a "carpet"-like dense PMAA layer near the hydrophobic layer and a polyelectrolyte brush layer. The hydrophilic chain length dependence of the diblock copolymer monolayer was analyzed using m:n = 30:x polymer samples, especially of the PMAA double layer structure. With the increase in PMAA chain length in polymer samples, a carpet layer is mainly formed up to n approximately 50. With further increase in the PMAA chain length beyond n approximately 50, a well-defined brush layer appears. On the other hand, the variation in hydrophobic layer thickness with methacrylic acid unit is minimum at the critical PMAA length, that is, n approximately 50 under a constant surface pressure condition. It is strongly suggested that the two discrete layers contribute differently to surface pressure. Furthermore, from the comprehensive viewpoint, the major factor for brush formation was clarified not to be the absolute length of the PMAA chain, but the ratio of PEt(2)SB and PMAA chain length is an important factor.     

Generalized Langevin theory on the dynamics of simple fluids under external fields

A theory on the time development of the density and current fields of simple fluids under an external field is formulated through the generalized Langevin formalism. The theory is applied to the linear solvation dynamics of a fixed solute regarding the solute as the external field on the solvent. The solute-solvent-solvent three-body correlation function is taken into account through the hypernetted-chain integral equation theory, and the time correlation function of the random force is approximated by that in the absence of the solute. The theoretical results are compared with those of molecular-dynamics (MD) simulation and the surrogate theory. As for the transient response of the density field, our theory is shown to be free from the artifact of the surrogate theory that the solvent can penetrate into the repulsive core of the solute during the relaxation. We have also found a large quantitative improvement of the solvation correlation function compared with the surrogate theory. In particular, the short-time part of the solvation correlation function is in almost perfect agreement with that from the MD simulation, reflecting that the short-time expansion of the theoretical solvation correlation function is exact up to t(2) with the exact three-body correlation function. A quantitative improvement is found in the long-time region, too. Our theory is also applied to the force-force time correlation function of a fixed solute, and similar improvement is obtained, which suggests that our present theory can be a basis to improve the mode-coupling theory on the solute diffusion.     

Nanostructure of a "carpet"-like dense layer/polyelectrolyte brush layer in a block copolymer monolayer at the air-water interface

The "carpet"/brush double layer structure in the polyelectrolyte layer in the amphiphilic diblock copolymer monolayer at the air-water interface was quantitatively studied by in situ neutron reflectometry in addition to X-ray reflectivity measurements. As a result of the higher contrast between polyelectrolyte [poly(methacrylic acid)] and solvent (D(2)O) for the neutron, the brush structure could be estimated more accurately as a function of surface pressure, that is, brush density. The thickness of the carpet layer, which is thought to be formed to reduce the interfacial free energy between water and the hydrophobic layer, was almost constant at 10-20 A at any surface pressure studied. Growth was clearly observed in the whole brush length with increasing surface pressure, and it was estimated to be almost 60% of the full-stretch length of the ionic polymer chain. Furthermore, by the comparison of density profiles by neutron and X-ray reflectometry, an anomalous hydration was suggested.     

ORIENTATION MOVEMENTS OF CHLOROPLASTS IN Vallisneria EPIDERMAL CELLS: DIFFERENT EFFECTS OF LIGHT AT LOW- and HIGH-FLUENCE RATE*

Abstract— Epidermal cells of Vallisneria gigantea have a large central vacuole which is surrounded by a thin layer of cytoplasm. The chloroplasts are distributed over all six cytoplasmic layers of an approximate cuboid. In low-intensity light, the accumulation of chloroplasts in the side facing the outer periclinal wall (the P side) continues for several hours. Red light (650 nm) shows the highest effect and induces such an accumulation even at a fluence rate of only 0.02 W/m². In response to high-intensity light, the chloroplasts move to the sides that face the anticlinal walls (the A sides) within a few tens of minutes. Blue light (450 nm) is most effective in inducing this movement. At a fluence rate of 1.51 W/m², the reaction is induced in only half of the specimens. Neither red nor blue light can induce any orientation movement in the presence of 100 μg/ml of cytochalasin B. The chloroplast movements in the P side have been examined with a time-lapse video system. When cells, in which the chloroplast accumulation has been completed after red-light irradiation, are subsequently irradiated with blue light, the rapid movement of chloroplasts to A sides is induced. However, a considerable number of chloroplasts remains in the center of the P side. The same is true of cells in which the chloroplasts have not accumulated in the P side because of cytochalasin B treatment during red-light irradiation, when such cells are irradiated with blue light after removal of the drug. Some anchoring mechanism seems to work in low-intensity light to render the chloroplasts immobile in the P side.